We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CIZ1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
80.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
70.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
65.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
62.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
61.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
59.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
56.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
55.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
51.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
48.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
46.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
44.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
41.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
39.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
38.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
38.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
36.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
34.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
31.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
31.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
30.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CIZ1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
37.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
1.1
192
Normal
1.0
497
Tumor
1.0
191
Tumor
0.9
221
Tumor
0.9
921
Tumor
0.9
977
Tumor
0.9
195
Tumor
0.8
943
Tumor
0.8
217
Tumor
0.8
815
Tumor
0.7
661
Tumor
0.7
285
Tumor
0.7
672
Normal
0.7
131
Tumor
0.7
498
Normal
0.7
433
Tumor
0.7
213
Tumor
0.7
218
Normal
0.6
965
Tumor
0.6
222
Normal
0.6
277
Tumor
0.6
975
Tumor
0.6
865
Tumor
0.6
283
Tumor
0.6
196
Normal
0.6
444
Normal
0.6
874
Normal
0.5
743
Tumor
0.5
545
Tumor
0.5
983
Tumor
0.5
224
Normal
0.5
737
Tumor
0.5
924
Normal
0.5
271
Tumor
0.5
385
Tumor
0.5
214
Normal
0.5
916
Normal
0.4
228
Normal
0.4
918
Normal
0.4
1031
Tumor
0.4
227
Tumor
0.4
391
Tumor
0.4
386
Normal
0.4
482
Normal
0.4
663
Tumor
0.4
881
Tumor
0.4
963
Tumor
0.4
445
Tumor
0.4
915
Tumor
0.4
161
Tumor
0.4
533
Tumor
0.4
724
Normal
0.4
817
Tumor
0.4
716
Normal
0.4
112
Tumor
0.4
268
Normal
0.4
1041
Tumor
0.3
523
Tumor
0.3
917
Tumor
0.3
727
Tumor
0.3
926
Normal
0.3
713
Tumor
0.3
553
Tumor
0.3
396
Normal
0.3
478
Normal
0.3
967
Tumor
0.3
823
Tumor
0.3
472
Normal
0.3
384
Normal
0.3
211
Tumor
0.3
427
Tumor
0.3
434
Normal
0.3
388
Normal
0.3
922
Normal
0.3
426
Normal
0.3
671
Tumor
0.3
1021
Tumor
0.3
146
Normal
0.3
878
Normal
0.3
423
Tumor
0.3
355
Tumor
0.3
721
Tumor
0.3
714
Normal
0.3
976
Normal
0.2
515
Tumor
0.2
857
Tumor
0.2
428
Normal
0.2
383
Tumor
0.2
538
Normal
0.2
138
Normal
0.2
1046
Normal
0.2
744
Normal
0.2
447
Tumor
0.2
715
Tumor
0.2
481
Tumor
0.2
446
Normal
0.2
424
Normal
0.2
816
Normal
0.2
786
Normal
0.2
884
Normal
0.2
536
Normal
0.2
188
Normal
0.2
696
Normal
0.2
958
Normal
0.2
818
Normal
0.2
882
Normal
0.2
411
Tumor
0.2
984
Normal
0.2
148
Normal
0.2
814
Normal
0.2
125
Tumor
0.2
863
Tumor
0.2
554
Normal
0.2
686
Normal
0.2
524
Normal
0.2
914
Normal
0.2
1025
Tumor
0.2
142
Normal
0.2
695
Tumor
0.2
937
Tumor
0.2
698
Normal
0.2
1044
Normal
0.2
537
Tumor
0.2
852
Normal
0.2
778
Normal
0.2
462
Normal
0.2
954
Normal
0.2
492
Normal
0.2
187
Tumor
0.2
953
Tumor
0.2
851
Tumor
0.2
516
Normal
0.2
473
Tumor
0.1
461
Tumor
0.1
722
Normal
0.1
298
Normal
0.1
968
Normal
0.1
494
Normal
0.1
432
Normal
0.1
223
Tumor
0.1
951
Tumor
0.1
964
Normal
0.1
912
Normal
0.1
212
Normal
0.1
858
Normal
0.1
728
Normal
0.1
145
Tumor
0.1
394
Normal
0.1
572
Normal
0.1
422
Normal
0.1
491
Tumor
0.1
527
Tumor
0.1
867
Tumor
0.1
328
Normal
0.1
488
Normal
0.1
331
Tumor
0.1
966
Normal
0.1
452
Normal
0.1
483
Tumor
0.1
392
Normal
0.1
431
Tumor
0.1
923
Tumor
0.1
395
Tumor
0.1
136
Normal
0.1
456
Normal
0.1
132
Normal
0.1
135
Tumor
0.1
1042
Normal
0.1
284
Normal
0.1
528
Normal
0.1
487
Tumor
0.1
493
Tumor
0.1
286
Normal
0.1
343
Tumor
0.1
267
Tumor
0.1
172
Normal
0.1
258
Normal
0.1
911
Tumor
0.0
162
Normal
0.0
297
Tumor
0.0
231
Tumor
0.0
957
Tumor
0.0
311
Tumor
0.0
563
Tumor
0.0
534
Normal
0.0
514
Normal
0.0
546
Normal
0.0
913
Tumor
0.0
415
Tumor
0.0
278
Normal
0.0
414
Normal
0.0
745
Tumor
0.0
526
Normal
0.0
147
Tumor
0.0
471
Tumor
0.0
364
Normal
0.0
262
Normal
0.0
1032
Normal
0.0
312
Normal
0.0
351
Tumor
0.0
982
Normal
0.0
186
Normal
0.0
416
Normal
0.0
742
Normal
0.0
517
Tumor
0.0
412
Normal
0.0
232
Normal
0.0
141
Tumor
0.0
1028
Normal
0.0
436
Normal
0.0
723
Tumor
0.0
685
Tumor
0.0
185
Tumor
0.0
952
Normal
0.0
464
Normal
0.0
746
Normal
0.0
824
Normal
0.0
435
Tumor
0.0
1016
Normal
0.0
356
Normal
0.0
327
Tumor
0.0
123
Tumor
0.0
393
Tumor
0.0
868
Normal
0.0
866
Normal
0.0
525
Tumor
0.0
1015
Tumor
0.0
467
Tumor
0.0
861
Tumor
0.0
864
Normal
0.0
785
Tumor
-0.1
662
Normal
-0.1
571
Tumor
-0.1
313
Tumor
-0.1
944
Normal
-0.1
375
Tumor
-0.1
877
Tumor
-0.1
357
Tumor
-0.1
741
Tumor
-0.1
873
Tumor
-0.1
665
Tumor
-0.1
1022
Normal
-0.1
558
Normal
-0.1
272
Normal
-0.1
978
Normal
-0.1
925
Tumor
-0.1
883
Tumor
-0.1
1014
Normal
-0.1
363
Tumor
-0.1
956
Normal
-0.1
756
Normal
-0.1
365
Tumor
-0.1
955
Tumor
-0.1
332
Normal
-0.1
448
Normal
-0.1
1043
Tumor
-0.1
127
Tumor
-0.1
535
Tumor
-0.1
425
Tumor
-0.1
697
Tumor
-0.1
738
Normal
-0.1
484
Normal
-0.1
567
Tumor
-0.1
574
Normal
-0.1
126
Normal
-0.1
938
Normal
-0.1
862
Normal
-0.2
813
Tumor
-0.2
261
Tumor
-0.2
367
Tumor
-0.2
513
Tumor
-0.2
573
Tumor
-0.2
474
Normal
-0.2
1045
Tumor
-0.2
466
Normal
-0.2
124
Normal
-0.2
777
Tumor
-0.2
387
Tumor
-0.2
114
Normal
-0.2
111
Normal
-0.2
664
Normal
-0.2
518
Normal
-0.2
477
Tumor
-0.2
1026
Normal
-0.2
568
Normal
-0.2
137
Tumor
-0.2
314
Normal
-0.2
468
Normal
-0.2
257
Tumor
-0.3
171
Tumor
-0.3
358
Normal
-0.3
465
Tumor
-0.3
647
Tumor
-0.3
557
Tumor
-0.3
128
Normal
-0.3
362
Normal
-0.3
413
Tumor
-0.3
564
Normal
-0.3
354
Normal
-0.3
451
Tumor
-0.3
755
Tumor
-0.3
1027
Tumor
-0.4
344
Normal
-0.4
455
Tumor
-0.4
666
Normal
-0.4
421
Tumor
-0.4
342
Normal
-0.4
1013
Tumor
-0.4
443
Tumor
-0.4
352
Normal
-0.4
368
Normal
-0.5
361
Tumor
-0.5
376
Normal
-0.5
648
Normal
-0.5
353
Tumor
-0.5
113
Tumor
-0.6
366
Normal
-0.6
981
Tumor
-0.7
341
Tumor
-0.7
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.