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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTGES2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
146.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
146.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
105.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
84.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
84.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
80.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
74.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
74.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
72.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
72.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
71.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
71.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
68.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
67.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
66.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
65.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
65.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
65.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
60.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
58.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
57.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
56.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
55.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
54.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
54.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
53.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
53.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
53.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
53.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
53.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
52.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
52.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
51.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
51.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
50.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
50.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
49.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
49.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
48.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
48.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
48.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
48.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
46.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
46.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
46.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
46.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
46.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
45.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
45.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
45.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
45.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
44.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
43.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
43.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
41.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
41.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
41.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
41.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
40.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
40.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
40.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
39.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
39.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
38.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
38.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
37.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
37.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
36.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
36.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
36.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
36.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
35.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
35.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
32.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
32.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
32.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
31.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
31.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
31.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
30.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
30.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
29.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
29.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
29.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
29.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
27.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
26.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
26.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTGES2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.0
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
118.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
79.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
76.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
76.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
70.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
70.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
66.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
61.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
61.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
60.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
60.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
57.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
56.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
53.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
52.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
51.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
50.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
48.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
48.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
46.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
46.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
46.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
45.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
42.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
42.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
42.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
41.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
41.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
38.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
37.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
34.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
32.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
28.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
26.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.3
745
Tumor
1.3
257
Tumor
1.2
513
Tumor
1.1
465
Tumor
1.0
365
Tumor
0.9
1027
Tumor
0.9
925
Tumor
0.9
123
Tumor
0.9
227
Tumor
0.9
127
Tumor
0.8
573
Tumor
0.8
851
Tumor
0.8
435
Tumor
0.7
967
Tumor
0.7
635
Tumor
0.7
427
Tumor
0.7
571
Tumor
0.7
567
Tumor
0.6
483
Tumor
0.6
451
Tumor
0.6
135
Tumor
0.6
665
Tumor
0.5
313
Tumor
0.5
425
Tumor
0.5
361
Tumor
0.5
615
Tumor
0.5
423
Tumor
0.5
873
Tumor
0.5
411
Tumor
0.5
145
Tumor
0.4
383
Tumor
0.4
937
Tumor
0.4
743
Tumor
0.4
231
Tumor
0.4
755
Tumor
0.4
113
Tumor
0.4
477
Tumor
0.4
1041
Tumor
0.4
191
Tumor
0.4
147
Tumor
0.4
953
Tumor
0.4
171
Tumor
0.4
124
Normal
0.4
517
Tumor
0.3
865
Tumor
0.3
722
Normal
0.3
327
Tumor
0.3
915
Tumor
0.3
727
Tumor
0.3
341
Tumor
0.3
487
Tumor
0.3
367
Tumor
0.3
537
Tumor
0.3
641
Tumor
0.3
112
Tumor
0.3
393
Tumor
0.2
913
Tumor
0.2
695
Tumor
0.2
1043
Tumor
0.2
172
Normal
0.2
867
Tumor
0.2
297
Tumor
0.2
557
Tumor
0.2
128
Normal
0.2
141
Tumor
0.2
111
Normal
0.2
161
Tumor
0.2
568
Normal
0.2
746
Normal
0.2
461
Tumor
0.2
1045
Tumor
0.2
162
Normal
0.1
648
Normal
0.1
146
Normal
0.1
466
Normal
0.1
636
Normal
0.1
671
Tumor
0.1
786
Normal
0.1
698
Normal
0.1
515
Tumor
0.1
223
Tumor
0.1
714
Normal
0.1
342
Normal
0.1
125
Tumor
0.1
564
Normal
0.1
424
Normal
0.1
114
Normal
0.1
868
Normal
0.1
186
Normal
0.1
462
Normal
0.1
452
Normal
0.1
426
Normal
0.1
436
Normal
0.1
343
Tumor
0.1
785
Tumor
0.1
721
Tumor
0.1
433
Tumor
0.1
368
Normal
0.1
314
Normal
0.1
132
Normal
0.1
362
Normal
0.1
493
Tumor
0.1
713
Tumor
0.1
387
Tumor
0.1
491
Tumor
0.1
464
Normal
0.0
126
Normal
0.0
384
Normal
0.0
366
Normal
0.0
385
Tumor
0.0
1021
Tumor
0.0
756
Normal
0.0
375
Tumor
0.0
213
Tumor
0.0
823
Tumor
0.0
618
Normal
0.0
911
Tumor
0.0
741
Tumor
0.0
214
Normal
0.0
533
Tumor
0.0
428
Normal
0.0
664
Normal
0.0
344
Normal
0.0
278
Normal
0.0
563
Tumor
0.0
196
Normal
0.0
332
Normal
0.0
642
Normal
0.0
414
Normal
0.0
358
Normal
0.0
413
Tumor
0.0
222
Normal
0.0
298
Normal
0.0
738
Normal
0.0
981
Tumor
0.0
534
Normal
0.0
685
Tumor
0.0
328
Normal
0.0
488
Normal
0.0
468
Normal
0.0
138
Normal
0.0
331
Tumor
0.0
432
Normal
0.0
232
Normal
0.0
394
Normal
0.0
525
Tumor
0.0
262
Normal
0.0
312
Normal
0.0
663
Tumor
0.0
392
Normal
0.0
286
Normal
0.0
864
Normal
0.0
742
Normal
0.0
195
Tumor
0.0
354
Normal
0.0
422
Normal
0.0
824
Normal
0.0
858
Normal
0.0
356
Normal
0.0
914
Normal
0.0
446
Normal
0.0
1032
Normal
0.0
628
Normal
0.0
862
Normal
0.0
212
Normal
0.0
258
Normal
-0.1
816
Normal
-0.1
285
Tumor
-0.1
1046
Normal
-0.1
224
Normal
-0.1
983
Tumor
-0.1
744
Normal
-0.1
777
Tumor
-0.1
137
Tumor
-0.1
421
Tumor
-0.1
148
Normal
-0.1
815
Tumor
-0.1
553
Tumor
-0.1
716
Normal
-0.1
616
Normal
-0.1
352
Normal
-0.1
715
Tumor
-0.1
922
Normal
-0.1
277
Tumor
-0.1
391
Tumor
-0.1
818
Normal
-0.1
884
Normal
-0.1
142
Normal
-0.1
686
Normal
-0.1
388
Normal
-0.1
463
Tumor
-0.1
728
Normal
-0.1
187
Tumor
-0.1
416
Normal
-0.1
357
Tumor
-0.1
434
Normal
-0.1
1025
Tumor
-0.1
546
Normal
-0.1
672
Normal
-0.1
1031
Tumor
-0.1
882
Normal
-0.1
1022
Normal
-0.1
448
Normal
-0.1
497
Tumor
-0.1
188
Normal
-0.1
852
Normal
-0.1
443
Tumor
-0.1
857
Tumor
-0.1
284
Normal
-0.1
1026
Normal
-0.1
572
Normal
-0.1
912
Normal
-0.1
268
Normal
-0.1
944
Normal
-0.1
1028
Normal
-0.1
185
Tumor
-0.1
1042
Normal
-0.1
926
Normal
-0.1
662
Normal
-0.1
923
Tumor
-0.1
494
Normal
-0.1
221
Tumor
-0.1
558
Normal
-0.1
415
Tumor
-0.1
136
Normal
-0.1
467
Tumor
-0.1
272
Normal
-0.1
528
Normal
-0.2
924
Normal
-0.2
482
Normal
-0.2
396
Normal
-0.2
874
Normal
-0.2
228
Normal
-0.2
376
Normal
-0.2
514
Normal
-0.2
978
Normal
-0.2
1015
Tumor
-0.2
445
Tumor
-0.2
954
Normal
-0.2
1016
Normal
-0.2
574
Normal
-0.2
666
Normal
-0.2
696
Normal
-0.2
218
Normal
-0.2
484
Normal
-0.2
883
Tumor
-0.2
982
Normal
-0.2
444
Normal
-0.2
456
Normal
-0.2
866
Normal
-0.2
968
Normal
-0.2
863
Tumor
-0.2
192
Normal
-0.2
386
Normal
-0.2
916
Normal
-0.2
617
Tumor
-0.2
921
Tumor
-0.2
1044
Normal
-0.2
984
Normal
-0.2
723
Tumor
-0.2
955
Tumor
-0.3
963
Tumor
-0.3
518
Normal
-0.3
271
Tumor
-0.3
878
Normal
-0.3
737
Tumor
-0.3
217
Tumor
-0.3
526
Normal
-0.3
472
Normal
-0.3
1014
Normal
-0.3
964
Normal
-0.3
412
Normal
-0.3
524
Normal
-0.3
938
Normal
-0.3
778
Normal
-0.3
661
Tumor
-0.3
977
Tumor
-0.3
554
Normal
-0.3
918
Normal
-0.3
353
Tumor
-0.3
474
Normal
-0.3
535
Tumor
-0.3
447
Tumor
-0.4
861
Tumor
-0.4
956
Normal
-0.4
966
Normal
-0.4
364
Normal
-0.4
951
Tumor
-0.4
492
Normal
-0.4
351
Tumor
-0.4
261
Tumor
-0.4
952
Normal
-0.4
516
Normal
-0.4
283
Tumor
-0.4
647
Tumor
-0.4
976
Normal
-0.4
478
Normal
-0.4
498
Normal
-0.4
817
Tumor
-0.4
363
Tumor
-0.4
813
Tumor
-0.5
355
Tumor
-0.5
965
Tumor
-0.5
523
Tumor
-0.5
957
Tumor
-0.5
267
Tumor
-0.5
538
Normal
-0.5
471
Tumor
-0.5
311
Tumor
-0.5
481
Tumor
-0.5
958
Normal
-0.5
1013
Tumor
-0.5
131
Tumor
-0.5
697
Tumor
-0.5
536
Normal
-0.6
395
Tumor
-0.6
881
Tumor
-0.6
455
Tumor
-0.6
431
Tumor
-0.6
917
Tumor
-0.6
975
Tumor
-0.6
814
Normal
-0.6
527
Tumor
-0.6
943
Tumor
-0.6
545
Tumor
-0.6
211
Tumor
-0.7
877
Tumor
-0.7
724
Normal
-0.7
473
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
