MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.8 nTPM
HPA Brain:41.2 nTPM
GTEx:40.8 nTPM
FANTOM5:22.6 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:6.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.7
2586 Male, age 75, left hemisphere 62.0
1827 Male, age 72, unknown 39.9
2219 Male, age 76, both hemispheres 36.7
2666 Male, age 74, left hemisphere 36.2
2828 Female, age 72, unknown 34.4
2411 Female, age 72, unknown 34.0
1833 Male, age 53, unknown 33.5
1870 Female, age 42, unknown 30.5
2019 Male, age 18, unknown 30.4
1830 Male, age 51, unknown 28.9
Dorsal raphe nucleus
nTPM: 34.3
2298 Female, age 72, unknown 37.1
1828 Male, age 53, unknown 36.7
2047 Male, age 72, unknown 35.2
2750 Male, age 76, both hemispheres 32.6
2016 Female, age 72, unknown 29.8
Inferior colliculus
nTPM: 37.4
2097 Female, age 72, unknown 42.9
1848 Female, age 42, unknown 36.3
1890 Male, age 53, unknown 36.1
2849 Male, age 72, unknown 34.1
Median raphe nucleus
nTPM: 35.9
2220 Male, age 76, midline 35.9
Periaquaductal grey, anterior
nTPM: 41.2
1947 Male, age 18, unknown 44.9
1795 Male, age 51, unknown 41.6
2502 Female, age 75, unknown 37.0
Periaquaductal grey, dorsal
nTPM: 30.2
1840 Male, age 53, unknown 35.4
1831 Male, age 72, unknown 30.3
2464 Female, age 72, unknown 28.9
2850 Male, age 76, both hemispheres 26.2
Periaquaductal grey, lateral
nTPM: 28.7
2272 Male, age 74, both hemispheres 29.5
2053 Male, age 18, unknown 29.0
2140 Male, age 76, both hemispheres 27.6
Pretectal area
nTPM: 36.4
1816 Male, age 51, unknown 46.2
2007 Male, age 72, unknown 46.1
1944 Female, age 72, unknown 41.8
1817 Female, age 42, unknown 40.9
2667 Female, age 75, unknown 39.3
2825 Male, age 18, unknown 35.4
1815 Male, age 53, unknown 34.9
2224 Female, age 72, unknown 33.5
2316 Male, age 76, right hemisphere 28.7
2407 Male, age 75, both hemispheres 28.6
2273 Male, age 74, both hemispheres 25.4
Red nucleus
nTPM: 35.1
2588 Male, age 74, left hemisphere 41.6
2725 Female, age 75, unknown 39.7
1821 Female, age 72, unknown 39.0
2584 Male, age 75, left hemisphere 39.0
2769 Male, age 72, unknown 36.9
2503 Female, age 72, unknown 36.8
2227 Male, age 72, unknown 35.5
2785 Male, age 18, unknown 34.5
1954 Female, age 42, unknown 32.3
1865 Male, age 51, unknown 30.7
1904 Male, age 53, unknown 30.5
2823 Male, age 76, right hemisphere 25.2
Substantia nigra
nTPM: 41.0
1916 Female, age 42, unknown 56.4
1851 Male, age 51, unknown 46.9
2665 Male, age 74, both hemispheres 46.2
1889 Female, age 72, unknown 43.5
1941 Male, age 53, unknown 41.1
2583 Male, age 75, right hemisphere 40.4
2699 Male, age 18, unknown 37.4
2241 Male, age 72, unknown 36.3
2590 Female, age 75, unknown 31.1
2409 Female, age 72, unknown 30.9
Superior colliculus
nTPM: 34.9
1796 Male, age 53, unknown 42.7
2261 Male, age 18, unknown 40.3
2664 Male, age 75, both hemispheres 39.7
2668 Female, age 75, unknown 39.7
2087 Female, age 72, unknown 39.3
1895 Male, age 76, right hemisphere 32.7
1839 Male, age 51, unknown 32.3
2587 Male, age 74, left hemisphere 30.1
1913 Female, age 42, unknown 26.1
1995 Male, age 72, unknown 26.0
Ventral tegmental area
nTPM: 39.9
1915 Female, age 42, unknown 47.9
2218 Male, age 76, both hemispheres 44.3
2410 Female, age 72, unknown 43.3
1942 Male, age 51, unknown 38.8
2223 Female, age 72, unknown 33.4
2021 Male, age 53, unknown 31.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.8
Samples: 139

Max nTPM: 77.3
Min nTPM: 15.6
Std nTPM: 13.8
Median nTPM: 39.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 77.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 76.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 70.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 67.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 66.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 65.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 65.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 64.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 64.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 64.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 63.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.6
FF:10158-103A5 76 years, female 22.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.7
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.7
Sample A Female 8.5
Sample B Female 7.7
Sample C Male 10.5
Sample D Male 8.0
Midbrain
nTPM: 11.6
Samples: 4

Max nTPM: 18.6
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 8.5
Sample C Male 18.6
Sample D Male 12.6
Periaqueductal gray
nTPM: 8.7
Samples: 3

Max nTPM: 9.6
Min nTPM: 8.3
Sample B Female 8.3
Sample C Male 9.6
Sample D Male 8.3
Superior colliculi
nTPM: 13.3
Samples: 4

Max nTPM: 18.5
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 12.2
Sample C Male 18.5
Sample D Male 12.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.1
Sample A Male 6.3
Sample B Male 6.2
Sample C Female 5.1
Sample D Female 6.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
67978412 Antisense, RP_040923_01_B04, Mouse strain C57BL/6J (56 days, male) 0.2

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