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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SURF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
69.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
66.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
64.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
62.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
61.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
57.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
57.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
57.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
56.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
56.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
56.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
56.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
55.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
54.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
52.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
52.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
52.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
52.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
52.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
51.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
51.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
51.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
50.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
50.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
50.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
49.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
49.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
49.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
49.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
49.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
48.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
48.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
48.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
46.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
46.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
46.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
46.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
45.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
45.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
45.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
44.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
44.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
44.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
43.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
43.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
43.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
43.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
43.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
43.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
43.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
42.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
42.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
42.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
42.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
42.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
41.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
41.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
41.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
41.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
41.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
41.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
40.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
40.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
40.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
40.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
39.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
39.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
39.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
39.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
39.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
39.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
39.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
39.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
39.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
38.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
38.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
37.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
37.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
37.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
37.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
36.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
36.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
36.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
35.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
35.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
35.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
35.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
35.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
34.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
34.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
34.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
34.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
34.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
33.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
33.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
33.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
33.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
33.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
33.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
32.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
32.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
32.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
32.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
31.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
31.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
30.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
29.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
29.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
28.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
27.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
26.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
25.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
25.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SURF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.5
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
138.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
107.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
102.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
100.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
98.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
91.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
86.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
85.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
82.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
81.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
73.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
73.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
73.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
72.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
71.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
70.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
70.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
69.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
67.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
66.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
66.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
66.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
66.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
65.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
65.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
64.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
64.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
64.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
63.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
63.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
63.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
61.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
61.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
60.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
58.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
58.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
58.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
57.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
57.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
56.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
56.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
56.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
56.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
56.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
56.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
56.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
55.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
55.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
54.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
54.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
54.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
54.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
54.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
53.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
53.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
52.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
51.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
51.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
50.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
49.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
49.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
49.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
48.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
48.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
48.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
48.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
48.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
48.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
48.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
47.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
47.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
47.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
47.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
46.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
46.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
45.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
45.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
45.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
45.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
45.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
44.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
44.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
44.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
44.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
44.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
44.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
44.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
43.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
43.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
43.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
43.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
42.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
42.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
42.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
42.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
42.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
41.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
41.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
41.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
40.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
40.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
40.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
40.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
39.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
39.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
39.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
39.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
39.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
39.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
39.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
39.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
38.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
37.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
37.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
36.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
36.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
35.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
35.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
35.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
35.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
35.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
35.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
35.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
34.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
33.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
32.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
32.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
30.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
513
Tumor
1.7
627
Tumor
1.6
981
Tumor
1.1
937
Tumor
1.0
745
Tumor
1.0
695
Tumor
0.8
925
Tumor
0.8
341
Tumor
0.8
231
Tumor
0.7
911
Tumor
0.7
361
Tumor
0.7
411
Tumor
0.7
1041
Tumor
0.7
851
Tumor
0.7
127
Tumor
0.7
685
Tumor
0.6
1015
Tumor
0.6
365
Tumor
0.6
957
Tumor
0.6
1043
Tumor
0.6
571
Tumor
0.5
615
Tumor
0.5
635
Tumor
0.5
921
Tumor
0.5
867
Tumor
0.5
755
Tumor
0.5
534
Normal
0.5
477
Tumor
0.5
785
Tumor
0.5
353
Tumor
0.5
1027
Tumor
0.5
145
Tumor
0.4
123
Tumor
0.4
955
Tumor
0.4
922
Normal
0.4
435
Tumor
0.4
915
Tumor
0.4
191
Tumor
0.4
1042
Normal
0.4
567
Tumor
0.4
414
Normal
0.4
452
Normal
0.4
918
Normal
0.4
823
Tumor
0.4
261
Tumor
0.4
1014
Normal
0.4
977
Tumor
0.4
1032
Normal
0.4
257
Tumor
0.3
557
Tumor
0.3
862
Normal
0.3
448
Normal
0.3
756
Normal
0.3
171
Tumor
0.3
944
Normal
0.3
515
Tumor
0.3
868
Normal
0.3
665
Tumor
0.3
715
Tumor
0.3
227
Tumor
0.3
861
Tumor
0.3
342
Normal
0.3
1025
Tumor
0.3
982
Normal
0.3
686
Normal
0.3
488
Normal
0.3
954
Normal
0.3
1026
Normal
0.3
424
Normal
0.3
328
Normal
0.3
526
Normal
0.3
466
Normal
0.3
426
Normal
0.3
554
Normal
0.2
472
Normal
0.2
314
Normal
0.2
425
Tumor
0.2
277
Tumor
0.2
723
Tumor
0.2
1028
Normal
0.2
546
Normal
0.2
223
Tumor
0.2
553
Tumor
0.2
494
Normal
0.2
465
Tumor
0.2
746
Normal
0.2
1045
Tumor
0.2
863
Tumor
0.2
451
Tumor
0.2
716
Normal
0.2
332
Normal
0.2
436
Normal
0.2
462
Normal
0.2
882
Normal
0.2
428
Normal
0.2
978
Normal
0.2
537
Tumor
0.2
354
Normal
0.2
952
Normal
0.2
492
Normal
0.2
976
Normal
0.2
714
Normal
0.2
286
Normal
0.2
482
Normal
0.2
344
Normal
0.2
926
Normal
0.2
474
Normal
0.2
112
Tumor
0.2
744
Normal
0.1
327
Tumor
0.1
956
Normal
0.1
866
Normal
0.1
864
Normal
0.1
824
Normal
0.1
524
Normal
0.1
873
Tumor
0.1
538
Normal
0.1
852
Normal
0.1
222
Normal
0.1
964
Normal
0.1
666
Normal
0.1
912
Normal
0.1
984
Normal
0.1
423
Tumor
0.1
278
Normal
0.1
884
Normal
0.1
967
Tumor
0.1
412
Normal
0.1
352
Normal
0.1
221
Tumor
0.1
416
Normal
0.1
433
Tumor
0.1
393
Tumor
0.1
818
Normal
0.1
214
Normal
0.1
514
Normal
0.1
968
Normal
0.1
1016
Normal
0.1
617
Tumor
0.1
432
Normal
0.1
516
Normal
0.1
172
Normal
0.1
415
Tumor
0.1
572
Normal
0.1
493
Tumor
0.1
362
Normal
0.1
114
Normal
0.1
113
Tumor
0.1
648
Normal
0.1
124
Normal
0.1
461
Tumor
0.1
422
Normal
0.1
737
Tumor
0.1
394
Normal
0.1
487
Tumor
0.0
722
Normal
0.0
138
Normal
0.0
218
Normal
0.0
392
Normal
0.0
132
Normal
0.0
141
Tumor
0.0
857
Tumor
0.0
533
Tumor
0.0
224
Normal
0.0
916
Normal
0.0
137
Tumor
0.0
728
Normal
0.0
484
Normal
0.0
958
Normal
0.0
376
Normal
0.0
558
Normal
0.0
478
Normal
0.0
146
Normal
0.0
953
Tumor
0.0
924
Normal
0.0
212
Normal
0.0
535
Tumor
0.0
528
Normal
0.0
618
Normal
0.0
228
Normal
0.0
142
Normal
0.0
147
Tumor
0.0
388
Normal
0.0
455
Tumor
0.0
195
Tumor
0.0
727
Tumor
0.0
721
Tumor
0.0
468
Normal
0.0
162
Normal
0.0
368
Normal
0.0
148
Normal
0.0
786
Normal
0.0
267
Tumor
0.0
464
Normal
0.0
298
Normal
0.0
111
Normal
0.0
662
Normal
0.0
568
Normal
0.0
938
Normal
0.0
536
Normal
0.0
564
Normal
0.0
738
Normal
0.0
671
Tumor
0.0
481
Tumor
0.0
865
Tumor
-0.1
816
Normal
-0.1
672
Normal
-0.1
1046
Normal
-0.1
1031
Tumor
-0.1
636
Normal
-0.1
1022
Normal
-0.1
696
Normal
-0.1
358
Normal
-0.1
262
Normal
-0.1
258
Normal
-0.1
698
Normal
-0.1
232
Normal
-0.1
914
Normal
-0.1
456
Normal
-0.1
642
Normal
-0.1
128
Normal
-0.1
913
Tumor
-0.1
713
Tumor
-0.1
471
Tumor
-0.1
446
Normal
-0.1
421
Tumor
-0.1
874
Normal
-0.1
366
Normal
-0.1
364
Normal
-0.1
963
Tumor
-0.1
616
Normal
-0.1
858
Normal
-0.1
272
Normal
-0.1
518
Normal
-0.1
815
Tumor
-0.1
525
Tumor
-0.1
312
Normal
-0.2
384
Normal
-0.2
467
Tumor
-0.2
966
Normal
-0.2
777
Tumor
-0.2
628
Normal
-0.2
473
Tumor
-0.2
951
Tumor
-0.2
196
Normal
-0.2
664
Normal
-0.2
483
Tumor
-0.2
498
Normal
-0.2
297
Tumor
-0.2
574
Normal
-0.2
126
Normal
-0.2
383
Tumor
-0.2
391
Tumor
-0.2
284
Normal
-0.2
741
Tumor
-0.2
136
Normal
-0.2
268
Normal
-0.2
878
Normal
-0.2
724
Normal
-0.3
545
Tumor
-0.3
817
Tumor
-0.3
573
Tumor
-0.3
447
Tumor
-0.3
742
Normal
-0.3
983
Tumor
-0.3
285
Tumor
-0.3
641
Tumor
-0.3
186
Normal
-0.3
965
Tumor
-0.3
187
Tumor
-0.3
697
Tumor
-0.3
445
Tumor
-0.3
778
Normal
-0.3
647
Tumor
-0.3
431
Tumor
-0.4
497
Tumor
-0.4
1044
Normal
-0.4
217
Tumor
-0.4
517
Tumor
-0.4
356
Normal
-0.4
192
Normal
-0.4
427
Tumor
-0.4
883
Tumor
-0.4
396
Normal
-0.4
367
Tumor
-0.4
386
Normal
-0.4
213
Tumor
-0.4
1021
Tumor
-0.4
975
Tumor
-0.4
363
Tumor
-0.5
271
Tumor
-0.5
491
Tumor
-0.5
185
Tumor
-0.5
161
Tumor
-0.5
188
Normal
-0.5
881
Tumor
-0.5
743
Tumor
-0.5
444
Normal
-0.5
443
Tumor
-0.5
395
Tumor
-0.5
434
Normal
-0.5
355
Tumor
-0.5
313
Tumor
-0.5
387
Tumor
-0.5
413
Tumor
-0.5
135
Tumor
-0.5
814
Normal
-0.6
563
Tumor
-0.6
1013
Tumor
-0.6
813
Tumor
-0.6
917
Tumor
-0.6
943
Tumor
-0.6
131
Tumor
-0.7
523
Tumor
-0.7
663
Tumor
-0.7
463
Tumor
-0.7
923
Tumor
-0.7
351
Tumor
-0.8
877
Tumor
-0.8
357
Tumor
-0.9
527
Tumor
-0.9
375
Tumor
-0.9
343
Tumor
-0.9
661
Tumor
-0.9
211
Tumor
-0.9
311
Tumor
-1.0
125
Tumor
-1.0
331
Tumor
-1.0
385
Tumor
-1.0
283
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
