BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:22.9 nTPM
HPA Brain:4.4 nTPM
GTEx:22.9 nTPM

CAUDATE - Antibody stainingi
Antibody HPA042759Antibody HPA042813
Glial cells Not detectedMedium
Neuronal cells Not detectedHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 4.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.1
2846 Female, age 79, unknown 5.5
2290 Female, age 72, unknown 5.0
1857 Female, age 85, left hemisphere 4.8
2288 Male, age 75, left hemisphere 4.4
1854 Male, age 80, left hemisphere 4.0
2289 Male, age 61, right hemisphere 3.9
2481 Female, age 94, left hemisphere 2.9
1781 Male, age 74, unknown 2.4
Globus pallidus, externus
nTPM: 2.9
2395 Male, age 75, both hemispheres 4.2
1996 Male, age 80, right hemisphere 3.4
2772 Female, age 79, unknown 3.1
2567 Female, age 72, unknown 2.1
2646 Male, age 61, right hemisphere 1.6
Globus pallidus, internus
nTPM: 3.3
2287 Male, age 75, right hemisphere 4.6
1818 Male, age 74, unknown 4.0
2483 Female, age 94, right hemisphere 4.0
2037 Male, age 80, right hemisphere 3.0
2778 Female, age 91, both hemispheres 2.7
2111 Female, age 85, right hemisphere 2.4
2566 Female, age 72, unknown 2.4
Nucleus accumbens
nTPM: 4.4
1856 Female, age 91, right hemisphere 6.0
1783 Male, age 74, unknown 4.9
2824 Male, age 61, right hemisphere 4.8
1806 Female, age 85, left hemisphere 4.4
2286 Male, age 75, left hemisphere 4.4
2391 Female, age 94, left hemisphere 4.3
2698 Female, age 72, unknown 3.5
2732 Male, age 80, right hemisphere 2.6
Nucleus basalis of Meynert
nTPM: 3.7
2821 Male, age 75, both hemispheres 4.9
2393 Male, age 80, right hemisphere 4.4
2484 Female, age 94, left hemisphere 4.1
2569 Male, age 61, both hemispheres 1.5
Nucleus of the diagonal band
nTPM: 3.8
2195 Female, age 85, both hemispheres 4.5
1979 Male, age 74, unknown 4.4
1812 Female, age 91, both hemispheres 4.0
2775 Male, age 80, right hemisphere 3.2
2029 Male, age 61, right hemisphere 3.0
Putamen
nTPM: 4.3
1937 Female, age 91, right hemisphere 5.5
1829 Male, age 74, unknown 4.9
2482 Female, age 94, left hemisphere 4.8
2466 Female, age 79, unknown 4.7
1838 Male, age 80, right hemisphere 4.3
2647 Male, age 75, left hemisphere 3.1
2489 Female, age 72, unknown 2.6
Septal nuclei
nTPM: 3.7
2031 Female, age 72, unknown 5.2
2629 Female, age 94, right hemisphere 4.2
2394 Male, age 61, left hemisphere 4.0
2199 Male, age 80, right hemisphere 3.9
1960 Male, age 74, unknown 3.4
2009 Female, age 91, both hemispheres 2.8
2059 Female, age 85, both hemispheres 2.2
Stria terminalis, bed nucleus
nTPM: 3.4
2201 Male, age 74, unknown 3.6
1974 Female, age 91, both hemispheres 3.5
2486 Female, age 94, both hemispheres 3.1

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 22.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.3
Samples: 246

Max nTPM: 55.2
Min nTPM: 4.2
Std nTPM: 8.8
Median nTPM: 18.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 55.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 51.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 47.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 45.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 45.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 45.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 39.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 38.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 38.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 38.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 38.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.9
Samples: 246

Max nTPM: 68.2
Min nTPM: 3.9
Std nTPM: 10.9
Median nTPM: 20.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 68.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 61.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 57.8
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 52.4
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 50.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 47.1
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 47.0
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 46.5
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 45.8
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 45.6
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 43.9
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Brain - Putamen (basal ganglia)
Average nTPM: 22.1
Samples: 205

Max nTPM: 69.2
Min nTPM: 5.5
Std nTPM: 9.3
Median nTPM: 20.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 69.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 51.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 46.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 42.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 42.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 41.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 40.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 40.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 40.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 40.0
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 38.7
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