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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDKN2A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
182.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
167.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
157.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
137.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
132.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
132.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
129.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
123.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
119.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
115.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
115.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
112.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
97.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
92.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
90.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
90.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
78.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
77.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
73.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
72.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
71.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
69.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
69.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
67.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
66.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
66.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
64.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
64.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
63.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
62.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
59.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
59.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
59.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
58.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
57.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
57.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
53.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
53.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
50.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
49.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
46.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
44.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
43.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
43.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
42.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
42.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
40.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
38.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
38.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
37.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
34.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
34.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
32.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
30.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
30.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
26.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDKN2A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.2
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
107.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
82.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
56.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
43.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
38.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
37.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
35.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
2.8
463
Tumor
2.2
313
Tumor
2.1
277
Tumor
2.0
695
Tumor
1.9
427
Tumor
1.9
957
Tumor
1.8
497
Tumor
1.7
545
Tumor
1.5
813
Tumor
1.5
525
Tumor
1.5
343
Tumor
1.5
211
Tumor
1.4
231
Tumor
1.4
161
Tumor
1.4
465
Tumor
1.4
393
Tumor
1.3
663
Tumor
1.2
953
Tumor
1.2
873
Tumor
1.2
814
Normal
1.1
357
Tumor
1.0
943
Tumor
1.0
467
Tumor
1.0
171
Tumor
1.0
533
Tumor
0.9
523
Tumor
0.9
141
Tumor
0.8
355
Tumor
0.8
647
Tumor
0.8
411
Tumor
0.7
923
Tumor
0.7
1013
Tumor
0.7
571
Tumor
0.7
487
Tumor
0.6
671
Tumor
0.6
877
Tumor
0.5
728
Normal
0.5
428
Normal
0.5
195
Tumor
0.5
727
Tumor
0.4
228
Normal
0.4
395
Tumor
0.4
424
Normal
0.4
981
Tumor
0.3
627
Tumor
0.3
746
Normal
0.3
982
Normal
0.3
983
Tumor
0.3
816
Normal
0.3
1025
Tumor
0.3
414
Normal
0.3
756
Normal
0.3
722
Normal
0.3
534
Normal
0.3
851
Tumor
0.3
452
Normal
0.3
1021
Tumor
0.3
188
Normal
0.3
616
Normal
0.2
615
Tumor
0.2
666
Normal
0.2
138
Normal
0.2
283
Tumor
0.2
978
Normal
0.2
464
Normal
0.2
298
Normal
0.2
482
Normal
0.2
937
Tumor
0.1
375
Tumor
0.1
648
Normal
0.1
137
Tumor
0.1
421
Tumor
0.1
1042
Normal
0.1
426
Normal
0.1
672
Normal
0.1
456
Normal
0.1
662
Normal
0.1
715
Tumor
0.1
976
Normal
0.1
212
Normal
0.1
1028
Normal
0.1
538
Normal
0.1
425
Tumor
0.1
713
Tumor
0.1
132
Normal
0.1
214
Normal
0.1
958
Normal
0.1
146
Normal
0.1
1032
Normal
0.1
642
Normal
0.1
472
Normal
0.1
852
Normal
0.1
665
Tumor
0.1
461
Tumor
0.1
468
Normal
0.0
554
Normal
0.0
271
Tumor
0.0
664
Normal
0.0
136
Normal
0.0
147
Tumor
0.0
446
Normal
0.0
546
Normal
0.0
352
Normal
0.0
451
Tumor
0.0
444
Normal
0.0
354
Normal
0.0
363
Tumor
0.0
187
Tumor
0.0
185
Tumor
0.0
528
Normal
0.0
1026
Normal
0.0
436
Normal
-0.1
493
Tumor
-0.1
956
Normal
-0.1
778
Normal
-0.1
286
Normal
-0.1
714
Normal
-0.1
356
Normal
-0.1
262
Normal
-0.1
527
Tumor
-0.1
135
Tumor
-0.1
954
Normal
-0.1
327
Tumor
-0.1
864
Normal
-0.1
423
Tumor
-0.1
944
Normal
-0.1
917
Tumor
-0.1
721
Tumor
-0.1
478
Normal
-0.1
396
Normal
-0.1
1022
Normal
-0.1
915
Tumor
-0.1
328
Normal
-0.1
696
Normal
-0.1
618
Normal
-0.1
466
Normal
-0.1
984
Normal
-0.1
272
Normal
-0.1
278
Normal
-0.2
716
Normal
-0.2
455
Tumor
-0.2
386
Normal
-0.2
391
Tumor
-0.2
785
Tumor
-0.2
394
Normal
-0.2
483
Tumor
-0.2
952
Normal
-0.2
284
Normal
-0.2
786
Normal
-0.2
432
Normal
-0.2
823
Tumor
-0.2
515
Tumor
-0.2
861
Tumor
-0.2
358
Normal
-0.2
142
Normal
-0.2
1016
Normal
-0.2
416
Normal
-0.2
492
Normal
-0.2
312
Normal
-0.2
332
Normal
-0.2
868
Normal
-0.2
686
Normal
-0.2
434
Normal
-0.2
131
Tumor
-0.2
268
Normal
-0.2
447
Tumor
-0.2
524
Normal
-0.2
513
Tumor
-0.2
232
Normal
-0.2
148
Normal
-0.2
628
Normal
-0.2
344
Normal
-0.2
127
Tumor
-0.2
341
Tumor
-0.2
384
Normal
-0.2
126
Normal
-0.3
1043
Tumor
-0.3
968
Normal
-0.3
491
Tumor
-0.3
488
Normal
-0.3
494
Normal
-0.3
191
Tumor
-0.3
938
Normal
-0.3
186
Normal
-0.3
123
Tumor
-0.3
975
Tumor
-0.3
388
Normal
-0.3
462
Normal
-0.3
422
Normal
-0.3
1044
Normal
-0.3
267
Tumor
-0.3
924
Normal
-0.3
162
Normal
-0.3
224
Normal
-0.3
258
Normal
-0.3
964
Normal
-0.3
342
Normal
-0.3
926
Normal
-0.3
617
Tumor
-0.3
376
Normal
-0.3
145
Tumor
-0.3
815
Tumor
-0.3
368
Normal
-0.3
955
Tumor
-0.3
685
Tumor
-0.4
863
Tumor
-0.4
383
Tumor
-0.4
498
Normal
-0.4
474
Normal
-0.4
387
Tumor
-0.4
661
Tumor
-0.4
366
Normal
-0.4
412
Normal
-0.4
113
Tumor
-0.4
536
Normal
-0.4
128
Normal
-0.4
918
Normal
-0.4
365
Tumor
-0.4
433
Tumor
-0.4
481
Tumor
-0.4
172
Normal
-0.4
966
Normal
-0.4
921
Tumor
-0.4
435
Tumor
-0.4
362
Normal
-0.4
641
Tumor
-0.4
192
Normal
-0.4
218
Normal
-0.4
443
Tumor
-0.5
636
Normal
-0.5
415
Tumor
-0.5
817
Tumor
-0.5
745
Tumor
-0.5
125
Tumor
-0.5
367
Tumor
-0.5
431
Tumor
-0.5
824
Normal
-0.5
535
Tumor
-0.5
755
Tumor
-0.5
1041
Tumor
-0.5
916
Normal
-0.5
564
Normal
-0.5
553
Tumor
-0.5
867
Tumor
-0.5
111
Normal
-0.5
364
Normal
-0.6
635
Tumor
-0.6
484
Normal
-0.6
353
Tumor
-0.6
227
Tumor
-0.6
392
Normal
-0.6
1015
Tumor
-0.6
257
Tumor
-0.6
413
Tumor
-0.6
114
Normal
-0.6
285
Tumor
-0.6
124
Normal
-0.6
857
Tumor
-0.6
866
Normal
-0.6
1031
Tumor
-0.6
977
Tumor
-0.7
517
Tumor
-0.7
261
Tumor
-0.7
217
Tumor
-0.7
874
Normal
-0.7
1027
Tumor
-0.7
818
Normal
-0.7
112
Tumor
-0.7
568
Normal
-0.7
922
Normal
-0.7
914
Normal
-0.7
518
Normal
-0.7
477
Tumor
-0.7
221
Tumor
-0.7
385
Tumor
-0.7
516
Normal
-0.7
473
Tumor
-0.8
558
Normal
-0.8
862
Normal
-0.8
967
Tumor
-0.8
573
Tumor
-0.8
526
Normal
-0.8
913
Tumor
-0.8
361
Tumor
-0.8
563
Tumor
-0.8
557
Tumor
-0.8
925
Tumor
-0.8
777
Tumor
-0.8
574
Normal
-0.8
1014
Normal
-0.8
572
Normal
-0.9
858
Normal
-0.9
514
Normal
-0.9
911
Tumor
-0.9
865
Tumor
-0.9
567
Tumor
-0.9
471
Tumor
-1.0
223
Tumor
-1.0
196
Normal
-1.0
537
Tumor
-1.0
881
Tumor
-1.0
884
Normal
-1.1
213
Tumor
-1.1
912
Normal
-1.1
951
Tumor
-1.1
351
Tumor
-1.2
222
Normal
-1.3
882
Normal
-1.3
965
Tumor
-1.4
1046
Normal
-1.4
697
Tumor
-1.4
297
Tumor
-1.5
883
Tumor
-1.5
878
Normal
-1.6
698
Normal
-1.8
963
Tumor
-1.8
331
Tumor
-2.0
311
Tumor
-2.0
1045
Tumor
-2.7
741
Tumor
-8.2
742
Normal
-9.0
723
Tumor
N/A
724
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
314
Normal
N/A
448
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
