MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.9 nTPM
HPA Brain:15.0 nTPM
GTEx:16.9 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:12.2 nTPM
Mouse:11.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
1870 Female, age 42, unknown 14.9
1833 Male, age 53, unknown 13.9
2019 Male, age 18, unknown 13.9
2828 Female, age 72, unknown 13.7
2411 Female, age 72, unknown 13.4
1830 Male, age 51, unknown 12.6
1827 Male, age 72, unknown 9.6
2666 Male, age 74, left hemisphere 9.6
2586 Male, age 75, left hemisphere 9.1
2219 Male, age 76, both hemispheres 7.4
Dorsal raphe nucleus
nTPM: 12.1
2016 Female, age 72, unknown 15.4
1828 Male, age 53, unknown 12.5
2298 Female, age 72, unknown 11.7
2047 Male, age 72, unknown 10.6
2750 Male, age 76, both hemispheres 10.1
Inferior colliculus
nTPM: 11.9
1848 Female, age 42, unknown 13.6
2097 Female, age 72, unknown 11.9
2849 Male, age 72, unknown 11.4
1890 Male, age 53, unknown 10.8
Median raphe nucleus
nTPM: 12.5
2220 Male, age 76, midline 12.5
Periaquaductal grey, anterior
nTPM: 9.5
1947 Male, age 18, unknown 9.8
2502 Female, age 75, unknown 9.7
1795 Male, age 51, unknown 9.0
Periaquaductal grey, dorsal
nTPM: 11.1
2464 Female, age 72, unknown 13.0
1831 Male, age 72, unknown 10.9
2850 Male, age 76, both hemispheres 10.6
1840 Male, age 53, unknown 10.0
Periaquaductal grey, lateral
nTPM: 10.9
2272 Male, age 74, both hemispheres 11.4
2140 Male, age 76, both hemispheres 10.9
2053 Male, age 18, unknown 10.3
Pretectal area
nTPM: 10.6
1817 Female, age 42, unknown 13.7
2667 Female, age 75, unknown 12.1
2273 Male, age 74, both hemispheres 12.0
1815 Male, age 53, unknown 11.8
2224 Female, age 72, unknown 11.7
1944 Female, age 72, unknown 10.3
2007 Male, age 72, unknown 10.1
2316 Male, age 76, right hemisphere 9.8
2825 Male, age 18, unknown 9.7
1816 Male, age 51, unknown 9.6
2407 Male, age 75, both hemispheres 6.3
Red nucleus
nTPM: 15.0
1954 Female, age 42, unknown 19.2
1821 Female, age 72, unknown 17.9
1904 Male, age 53, unknown 17.3
1865 Male, age 51, unknown 16.8
2227 Male, age 72, unknown 16.3
2503 Female, age 72, unknown 15.7
2769 Male, age 72, unknown 15.5
2823 Male, age 76, right hemisphere 14.3
2785 Male, age 18, unknown 13.2
2725 Female, age 75, unknown 12.5
2588 Male, age 74, left hemisphere 12.0
2584 Male, age 75, left hemisphere 9.1
Substantia nigra
nTPM: 13.3
2699 Male, age 18, unknown 16.5
2590 Female, age 75, unknown 15.5
2665 Male, age 74, both hemispheres 15.5
2409 Female, age 72, unknown 15.2
1916 Female, age 42, unknown 14.7
1851 Male, age 51, unknown 14.0
1889 Female, age 72, unknown 11.7
2241 Male, age 72, unknown 11.5
2583 Male, age 75, right hemisphere 9.4
1941 Male, age 53, unknown 8.6
Superior colliculus
nTPM: 11.1
1995 Male, age 72, unknown 15.7
1913 Female, age 42, unknown 14.1
2587 Male, age 74, left hemisphere 12.3
1796 Male, age 53, unknown 11.9
1839 Male, age 51, unknown 11.1
1895 Male, age 76, right hemisphere 10.9
2087 Female, age 72, unknown 10.5
2668 Female, age 75, unknown 9.1
2261 Male, age 18, unknown 8.6
2664 Male, age 75, both hemispheres 7.2
Ventral tegmental area
nTPM: 12.0
2410 Female, age 72, unknown 14.6
1915 Female, age 42, unknown 13.7
2223 Female, age 72, unknown 12.4
2021 Male, age 53, unknown 11.9
1942 Male, age 51, unknown 9.8
2218 Male, age 76, both hemispheres 9.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.9
Samples: 139

Max nTPM: 81.4
Min nTPM: 3.2
Std nTPM: 12.9
Median nTPM: 12.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 81.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 73.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 72.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 70.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 54.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 44.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 42.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 40.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 36.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 34.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 33.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.6
FF:10158-103A5 76 years, female 11.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.2
Samples: 4

Max nTPM: 17.7
Min nTPM: 9.5
Sample A Female 10.3
Sample B Female 17.7
Sample C Male 9.5
Sample D Male 11.3
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 13.5
Min nTPM: 6.5
Sample A Female 13.5
Sample B Female 9.5
Sample C Male 6.5
Sample D Male 7.6
Periaqueductal gray
nTPM: 9.4
Samples: 3

Max nTPM: 9.8
Min nTPM: 8.9
Sample B Female 9.5
Sample C Male 9.8
Sample D Male 8.9
Superior colliculi
nTPM: 10.8
Samples: 4

Max nTPM: 16.7
Min nTPM: 7.4
Sample A Female 10.8
Sample B Female 16.7
Sample C Male 8.1
Sample D Male 7.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 13.3
Min nTPM: 9.7
Sample A Male 12.5
Sample B Male 13.3
Sample C Female 9.7
Sample D Female 12.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75988239 Antisense, RP_060606_02_D11, Mouse strain C57BL/6J (56 days, male) 0.3

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