MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.3 nTPM
HPA Brain:22.7 nTPM
GTEx:11.3 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Pig:7.1 nTPM
Mouse:5.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.2
2019 Male, age 18, unknown 24.6
2219 Male, age 76, both hemispheres 23.6
1830 Male, age 51, unknown 23.2
2666 Male, age 74, left hemisphere 23.0
2586 Male, age 75, left hemisphere 22.7
2828 Female, age 72, unknown 22.0
1833 Male, age 53, unknown 21.9
2411 Female, age 72, unknown 20.7
1827 Male, age 72, unknown 20.6
1870 Female, age 42, unknown 19.4
Dorsal raphe nucleus
nTPM: 19.7
2750 Male, age 76, both hemispheres 22.4
2016 Female, age 72, unknown 19.3
2047 Male, age 72, unknown 19.3
1828 Male, age 53, unknown 19.1
2298 Female, age 72, unknown 18.2
Inferior colliculus
nTPM: 20.3
2097 Female, age 72, unknown 21.0
1890 Male, age 53, unknown 20.7
1848 Female, age 42, unknown 20.3
2849 Male, age 72, unknown 19.1
Median raphe nucleus
nTPM: 19.3
2220 Male, age 76, midline 19.3
Periaquaductal grey, anterior
nTPM: 20.3
1947 Male, age 18, unknown 21.3
2502 Female, age 75, unknown 21.2
1795 Male, age 51, unknown 18.5
Periaquaductal grey, dorsal
nTPM: 19.5
2464 Female, age 72, unknown 21.6
1831 Male, age 72, unknown 19.8
2850 Male, age 76, both hemispheres 18.4
1840 Male, age 53, unknown 18.3
Periaquaductal grey, lateral
nTPM: 20.7
2140 Male, age 76, both hemispheres 21.2
2053 Male, age 18, unknown 20.8
2272 Male, age 74, both hemispheres 20.1
Pretectal area
nTPM: 21.0
2407 Male, age 75, both hemispheres 25.6
2316 Male, age 76, right hemisphere 24.3
2007 Male, age 72, unknown 21.6
1815 Male, age 53, unknown 21.2
1816 Male, age 51, unknown 20.6
2667 Female, age 75, unknown 20.5
2825 Male, age 18, unknown 20.5
2273 Male, age 74, both hemispheres 20.2
1817 Female, age 42, unknown 19.6
1944 Female, age 72, unknown 18.5
2224 Female, age 72, unknown 18.1
Red nucleus
nTPM: 22.7
2823 Male, age 76, right hemisphere 26.2
1865 Male, age 51, unknown 24.6
2588 Male, age 74, left hemisphere 24.1
1904 Male, age 53, unknown 23.8
2227 Male, age 72, unknown 23.8
2584 Male, age 75, left hemisphere 23.7
2503 Female, age 72, unknown 22.7
2769 Male, age 72, unknown 22.5
2785 Male, age 18, unknown 21.3
1954 Female, age 42, unknown 20.4
2725 Female, age 75, unknown 19.9
1821 Female, age 72, unknown 19.8
Substantia nigra
nTPM: 19.3
2583 Male, age 75, right hemisphere 22.0
2665 Male, age 74, both hemispheres 21.6
2590 Female, age 75, unknown 21.5
2241 Male, age 72, unknown 19.8
2409 Female, age 72, unknown 19.2
1941 Male, age 53, unknown 18.4
1889 Female, age 72, unknown 18.3
1851 Male, age 51, unknown 18.0
2699 Male, age 18, unknown 18.0
1916 Female, age 42, unknown 16.6
Superior colliculus
nTPM: 21.5
1913 Female, age 42, unknown 24.1
2664 Male, age 75, both hemispheres 22.3
1995 Male, age 72, unknown 22.0
2087 Female, age 72, unknown 22.0
1895 Male, age 76, right hemisphere 21.5
1839 Male, age 51, unknown 21.4
2668 Female, age 75, unknown 21.4
2261 Male, age 18, unknown 21.3
1796 Male, age 53, unknown 20.8
2587 Male, age 74, left hemisphere 18.7
Ventral tegmental area
nTPM: 19.6
2021 Male, age 53, unknown 21.7
1942 Male, age 51, unknown 20.7
2410 Female, age 72, unknown 19.1
2218 Male, age 76, both hemispheres 18.9
1915 Female, age 42, unknown 18.8
2223 Female, age 72, unknown 18.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.3
Samples: 139

Max nTPM: 18.5
Min nTPM: 6.9
Std nTPM: 2.1
Median nTPM: 10.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 18.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 17.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 16.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 16.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 16.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 15.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 15.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 15.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 15.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 15.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 15.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.7
FF:10158-103A5 76 years, female 13.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.1
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.2
Sample A Female 7.1
Sample B Female 6.2
Sample C Male 6.8
Sample D Male 8.2
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.1
Sample A Female 8.2
Sample B Female 7.5
Sample C Male 6.1
Sample D Male 6.7
Periaqueductal gray
nTPM: 6.8
Samples: 3

Max nTPM: 7.2
Min nTPM: 6.2
Sample B Female 7.0
Sample C Male 6.2
Sample D Male 7.2
Superior colliculi
nTPM: 7.1
Samples: 4

Max nTPM: 7.3
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 7.3
Sample C Male 7.2
Sample D Male 7.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.0
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.3
Sample A Male 4.6
Sample B Male 6.4
Sample C Female 4.7
Sample D Female 4.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
386030 Antisense, RP_040804_01_B08, Mouse strain C57BL/6J (56 days, male) 0.0

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