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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYBU is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
129.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
115.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
89.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
86.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
72.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
72.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
71.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
70.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
68.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
68.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
66.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
65.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
62.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
61.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
61.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
61.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
60.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
60.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
58.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
58.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
56.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
55.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
55.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
54.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
53.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
53.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
52.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
51.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
49.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
49.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
48.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
48.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
46.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
45.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
44.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
42.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
42.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
42.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
40.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
40.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
40.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
38.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
37.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
35.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
33.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
33.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
33.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
32.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
30.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
28.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYBU is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.8
Number of samples
231
Samples
Sample
Description
TPM
DO45171
0 years, male, NA, stage:3, alive, 600 days
136.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
114.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
110.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
95.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
87.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
75.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
75.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
69.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
67.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
63.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
61.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
56.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
53.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
52.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
52.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
52.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
50.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
48.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
47.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
43.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
42.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
41.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
40.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
715
Tumor
1.5
1041
Tumor
1.2
451
Tumor
1.0
267
Tumor
0.8
423
Tumor
0.8
981
Tumor
0.8
557
Tumor
0.8
937
Tumor
0.8
568
Normal
0.8
488
Normal
0.7
756
Normal
0.7
427
Tumor
0.7
171
Tumor
0.7
342
Normal
0.7
112
Tumor
0.7
353
Tumor
0.7
878
Normal
0.7
867
Tumor
0.7
231
Tumor
0.7
352
Normal
0.7
487
Tumor
0.7
967
Tumor
0.6
663
Tumor
0.6
564
Normal
0.6
465
Tumor
0.6
466
Normal
0.6
426
Normal
0.6
344
Normal
0.6
428
Normal
0.6
388
Normal
0.6
422
Normal
0.6
873
Tumor
0.6
392
Normal
0.6
394
Normal
0.6
882
Normal
0.6
572
Normal
0.5
574
Normal
0.5
396
Normal
0.5
232
Normal
0.5
354
Normal
0.5
358
Normal
0.5
186
Normal
0.5
218
Normal
0.5
468
Normal
0.5
861
Tumor
0.5
744
Normal
0.5
494
Normal
0.5
698
Normal
0.5
925
Tumor
0.5
414
Normal
0.5
446
Normal
0.5
196
Normal
0.5
617
Tumor
0.5
113
Tumor
0.5
685
Tumor
0.5
161
Tumor
0.5
484
Normal
0.5
395
Tumor
0.5
452
Normal
0.5
172
Normal
0.4
412
Normal
0.4
526
Normal
0.4
636
Normal
0.4
376
Normal
0.4
443
Tumor
0.4
424
Normal
0.4
666
Normal
0.4
456
Normal
0.4
148
Normal
0.4
1014
Normal
0.4
862
Normal
0.4
341
Tumor
0.4
261
Tumor
0.4
222
Normal
0.4
132
Normal
0.4
473
Tumor
0.4
534
Normal
0.4
912
Normal
0.4
356
Normal
0.4
722
Normal
0.4
984
Normal
0.4
723
Tumor
0.4
328
Normal
0.4
327
Tumor
0.4
964
Normal
0.4
958
Normal
0.4
786
Normal
0.4
142
Normal
0.4
955
Tumor
0.4
686
Normal
0.4
421
Tumor
0.4
514
Normal
0.4
911
Tumor
0.4
818
Normal
0.4
558
Normal
0.4
714
Normal
0.3
742
Normal
0.3
498
Normal
0.3
124
Normal
0.3
332
Normal
0.3
976
Normal
0.3
824
Normal
0.3
954
Normal
0.3
432
Normal
0.3
915
Tumor
0.3
464
Normal
0.3
518
Normal
0.3
778
Normal
0.3
858
Normal
0.3
944
Normal
0.3
864
Normal
0.3
913
Tumor
0.3
696
Normal
0.3
728
Normal
0.3
228
Normal
0.3
528
Normal
0.3
1028
Normal
0.3
162
Normal
0.3
214
Normal
0.3
482
Normal
0.3
968
Normal
0.3
865
Tumor
0.3
866
Normal
0.3
258
Normal
0.2
627
Tumor
0.2
127
Tumor
0.2
716
Normal
0.2
298
Normal
0.2
982
Normal
0.2
554
Normal
0.2
481
Tumor
0.2
738
Normal
0.2
286
Normal
0.2
665
Tumor
0.2
364
Normal
0.2
1046
Normal
0.2
114
Normal
0.2
448
Normal
0.2
436
Normal
0.2
467
Tumor
0.2
1015
Tumor
0.2
111
Normal
0.2
1022
Normal
0.2
138
Normal
0.2
444
Normal
0.2
1044
Normal
0.2
868
Normal
0.2
126
Normal
0.2
462
Normal
0.2
642
Normal
0.2
137
Tumor
0.2
618
Normal
0.2
616
Normal
0.2
816
Normal
0.2
386
Normal
0.2
314
Normal
0.2
546
Normal
0.2
914
Normal
0.2
963
Tumor
0.2
128
Normal
0.2
278
Normal
0.1
746
Normal
0.1
628
Normal
0.1
472
Normal
0.1
648
Normal
0.1
966
Normal
0.1
924
Normal
0.1
185
Tumor
0.1
136
Normal
0.1
571
Tumor
0.1
524
Normal
0.1
1016
Normal
0.1
223
Tumor
0.1
195
Tumor
0.1
538
Normal
0.1
697
Tumor
0.1
1032
Normal
0.1
664
Normal
0.1
755
Tumor
0.1
268
Normal
0.1
368
Normal
0.1
863
Tumor
0.1
938
Normal
0.1
366
Normal
0.1
922
Normal
0.1
284
Normal
0.1
1026
Normal
0.1
492
Normal
0.0
662
Normal
0.0
884
Normal
0.0
1013
Tumor
0.0
672
Normal
0.0
262
Normal
0.0
1045
Tumor
0.0
257
Tumor
0.0
357
Tumor
0.0
874
Normal
0.0
536
Normal
0.0
978
Normal
0.0
926
Normal
0.0
474
Normal
0.0
212
Normal
0.0
188
Normal
0.0
146
Normal
0.0
721
Tumor
0.0
533
Tumor
0.0
952
Normal
0.0
283
Tumor
0.0
224
Normal
0.0
516
Normal
0.0
434
Normal
-0.1
493
Tumor
-0.1
956
Normal
-0.1
361
Tumor
-0.1
272
Normal
-0.1
478
Normal
-0.1
145
Tumor
-0.1
641
Tumor
-0.1
416
Normal
-0.1
445
Tumor
-0.1
527
Tumor
-0.1
384
Normal
-0.1
362
Normal
-0.1
431
Tumor
-0.1
187
Tumor
-0.1
1042
Normal
-0.1
312
Normal
-0.2
217
Tumor
-0.2
563
Tumor
-0.2
513
Tumor
-0.2
425
Tumor
-0.2
553
Tumor
-0.2
977
Tumor
-0.2
463
Tumor
-0.2
213
Tumor
-0.2
191
Tumor
-0.2
615
Tumor
-0.2
537
Tumor
-0.2
918
Normal
-0.2
433
Tumor
-0.2
785
Tumor
-0.2
385
Tumor
-0.2
497
Tumor
-0.2
227
Tumor
-0.2
965
Tumor
-0.2
461
Tumor
-0.2
695
Tumor
-0.2
355
Tumor
-0.3
852
Normal
-0.3
975
Tumor
-0.3
415
Tumor
-0.3
447
Tumor
-0.3
387
Tumor
-0.3
147
Tumor
-0.3
271
Tumor
-0.3
635
Tumor
-0.4
477
Tumor
-0.4
573
Tumor
-0.4
745
Tumor
-0.4
141
Tumor
-0.4
393
Tumor
-0.4
483
Tumor
-0.4
192
Normal
-0.4
313
Tumor
-0.4
1043
Tumor
-0.4
525
Tumor
-0.4
567
Tumor
-0.4
523
Tumor
-0.4
297
Tumor
-0.4
916
Normal
-0.5
515
Tumor
-0.5
517
Tumor
-0.5
953
Tumor
-0.5
413
Tumor
-0.5
365
Tumor
-0.5
814
Normal
-0.5
957
Tumor
-0.5
351
Tumor
-0.6
741
Tumor
-0.6
331
Tumor
-0.6
285
Tumor
-0.6
221
Tumor
-0.6
857
Tumor
-0.6
343
Tumor
-0.6
813
Tumor
-0.6
713
Tumor
-0.6
311
Tumor
-0.7
1025
Tumor
-0.7
491
Tumor
-0.7
411
Tumor
-0.7
647
Tumor
-0.7
123
Tumor
-0.7
883
Tumor
-0.7
435
Tumor
-0.7
1027
Tumor
-0.8
391
Tumor
-0.8
455
Tumor
-0.8
375
Tumor
-0.8
727
Tumor
-0.8
277
Tumor
-0.8
917
Tumor
-0.8
471
Tumor
-0.8
851
Tumor
-0.9
383
Tumor
-0.9
125
Tumor
-0.9
135
Tumor
-0.9
943
Tumor
-0.9
823
Tumor
-0.9
777
Tumor
-0.9
881
Tumor
-0.9
923
Tumor
-1.0
1021
Tumor
-1.0
737
Tumor
-1.0
1031
Tumor
-1.1
983
Tumor
-1.1
671
Tumor
-1.1
661
Tumor
-1.2
211
Tumor
-1.2
877
Tumor
-1.3
724
Normal
-1.3
535
Tumor
-1.3
951
Tumor
-1.3
367
Tumor
-1.4
545
Tumor
-1.5
363
Tumor
-1.5
817
Tumor
-1.7
743
Tumor
-1.7
815
Tumor
-1.7
921
Tumor
-2.2
131
Tumor
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
