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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LACTB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
167.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
148.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
140.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
134.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
130.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
124.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
116.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
112.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
111.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
104.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
93.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
93.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
93.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
92.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
92.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
91.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
89.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
87.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
86.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
85.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
85.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
84.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
83.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
80.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
79.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
78.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
75.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
75.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
74.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
74.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
73.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
73.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
72.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
71.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
70.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
69.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
69.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
69.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
68.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
67.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
67.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
66.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
65.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
64.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
64.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
64.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
63.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
63.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
63.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
62.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
61.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
61.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
61.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
61.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
60.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
60.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
60.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
59.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
58.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
56.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
56.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
56.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
56.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
55.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
53.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
52.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
52.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
52.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
52.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
52.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
50.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
50.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
50.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
50.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
49.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
48.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
48.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
48.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
47.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
47.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
47.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
46.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
46.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
46.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
46.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
45.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
45.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
44.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
44.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
44.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
43.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
43.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
43.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
43.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
43.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
42.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
42.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
42.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
41.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
41.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
40.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
39.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
39.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
39.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
39.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
39.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
38.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
37.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
37.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
37.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
35.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
35.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
35.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
34.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
34.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
30.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
30.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
27.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
27.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LACTB2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.3
Number of samples
231
Samples
Sample
Description
TPM
DO50811
0 years, male, NA, stage:1, alive, 450 days
146.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
118.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
117.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
114.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
112.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
104.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
99.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
98.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
94.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
87.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
85.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
80.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
79.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
70.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
69.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
68.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
68.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
67.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
65.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
65.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
64.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
61.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
61.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
59.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
57.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
54.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
54.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
53.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
53.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
52.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
52.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
51.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
50.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
50.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
49.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
49.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
48.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
46.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
42.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
40.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
39.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
36.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
36.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
33.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
32.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
32.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
30.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.2
185
Tumor
1.1
557
Tumor
1.0
467
Tumor
0.8
865
Tumor
0.8
451
Tumor
0.8
1041
Tumor
0.7
937
Tumor
0.7
685
Tumor
0.7
147
Tumor
0.6
123
Tumor
0.6
145
Tumor
0.6
257
Tumor
0.6
925
Tumor
0.6
715
Tumor
0.5
113
Tumor
0.5
353
Tumor
0.5
375
Tumor
0.5
363
Tumor
0.5
443
Tumor
0.5
191
Tumor
0.4
415
Tumor
0.4
267
Tumor
0.4
911
Tumor
0.4
436
Normal
0.4
915
Tumor
0.4
627
Tumor
0.4
395
Tumor
0.3
135
Tumor
0.3
951
Tumor
0.3
261
Tumor
0.3
513
Tumor
0.3
641
Tumor
0.3
172
Normal
0.3
483
Tumor
0.3
851
Tumor
0.3
341
Tumor
0.3
137
Tumor
0.3
452
Normal
0.3
416
Normal
0.2
132
Normal
0.2
745
Tumor
0.2
421
Tumor
0.2
423
Tumor
0.2
171
Tumor
0.2
427
Tumor
0.2
955
Tumor
0.2
161
Tumor
0.2
327
Tumor
0.2
477
Tumor
0.2
957
Tumor
0.2
465
Tumor
0.2
642
Normal
0.2
1015
Tumor
0.1
462
Normal
0.1
746
Normal
0.1
1028
Normal
0.1
618
Normal
0.1
861
Tumor
0.1
533
Tumor
0.1
356
Normal
0.1
435
Tumor
0.1
663
Tumor
0.1
938
Normal
0.1
186
Normal
0.1
518
Normal
0.1
868
Normal
0.1
428
Normal
0.1
136
Normal
0.1
127
Tumor
0.1
141
Tumor
0.1
537
Tumor
0.1
1016
Normal
0.1
1013
Tumor
0.1
922
Normal
0.0
114
Normal
0.0
112
Tumor
0.0
615
Tumor
0.0
414
Normal
0.0
981
Tumor
0.0
464
Normal
0.0
916
Normal
0.0
474
Normal
0.0
148
Normal
0.0
313
Tumor
0.0
362
Normal
0.0
534
Normal
0.0
328
Normal
0.0
422
Normal
0.0
914
Normal
0.0
138
Normal
0.0
952
Normal
0.0
698
Normal
0.0
426
Normal
0.0
466
Normal
0.0
636
Normal
0.0
924
Normal
0.0
878
Normal
0.0
874
Normal
0.0
628
Normal
0.0
128
Normal
0.0
526
Normal
0.0
1043
Tumor
0.0
262
Normal
0.0
538
Normal
0.0
956
Normal
0.0
272
Normal
0.0
866
Normal
0.0
697
Tumor
0.0
434
Normal
0.0
188
Normal
0.0
918
Normal
0.0
111
Normal
0.0
546
Normal
-0.1
187
Tumor
-0.1
432
Normal
-0.1
1045
Tumor
-0.1
944
Normal
-0.1
424
Normal
-0.1
312
Normal
-0.1
162
Normal
-0.1
567
Tumor
-0.1
728
Normal
-0.1
1027
Tumor
-0.1
738
Normal
-0.1
472
Normal
-0.1
314
Normal
-0.1
126
Normal
-0.1
786
Normal
-0.1
554
Normal
-0.1
493
Tumor
-0.1
484
Normal
-0.1
212
Normal
-0.1
1022
Normal
-0.1
1042
Normal
-0.1
412
Normal
-0.1
232
Normal
-0.1
884
Normal
-0.1
196
Normal
-0.1
468
Normal
-0.1
342
Normal
-0.1
298
Normal
-0.1
365
Tumor
-0.1
268
Normal
-0.1
218
Normal
-0.1
778
Normal
-0.1
364
Normal
-0.2
984
Normal
-0.2
862
Normal
-0.2
332
Normal
-0.2
816
Normal
-0.2
124
Normal
-0.2
883
Tumor
-0.2
742
Normal
-0.2
214
Normal
-0.2
954
Normal
-0.2
882
Normal
-0.2
635
Tumor
-0.2
864
Normal
-0.2
494
Normal
-0.2
482
Normal
-0.2
516
Normal
-0.2
617
Tumor
-0.2
471
Tumor
-0.2
433
Tumor
-0.2
528
Normal
-0.2
968
Normal
-0.2
146
Normal
-0.2
716
Normal
-0.2
195
Tumor
-0.2
966
Normal
-0.2
376
Normal
-0.2
222
Normal
-0.2
481
Tumor
-0.2
344
Normal
-0.2
411
Tumor
-0.2
568
Normal
-0.2
492
Normal
-0.2
361
Tumor
-0.2
1032
Normal
-0.2
714
Normal
-0.2
258
Normal
-0.2
358
Normal
-0.2
388
Normal
-0.2
514
Normal
-0.3
824
Normal
-0.3
823
Tumor
-0.3
497
Tumor
-0.3
286
Normal
-0.3
755
Tumor
-0.3
278
Normal
-0.3
873
Tumor
-0.3
366
Normal
-0.3
852
Normal
-0.3
1026
Normal
-0.3
446
Normal
-0.3
368
Normal
-0.3
394
Normal
-0.3
387
Tumor
-0.3
445
Tumor
-0.3
976
Normal
-0.3
574
Normal
-0.3
982
Normal
-0.3
686
Normal
-0.3
1025
Tumor
-0.3
756
Normal
-0.3
964
Normal
-0.3
448
Normal
-0.3
616
Normal
-0.3
142
Normal
-0.3
818
Normal
-0.3
386
Normal
-0.3
125
Tumor
-0.3
857
Tumor
-0.3
696
Normal
-0.3
525
Tumor
-0.4
425
Tumor
-0.4
456
Normal
-0.4
1014
Normal
-0.4
396
Normal
-0.4
858
Normal
-0.4
473
Tumor
-0.4
515
Tumor
-0.4
1031
Tumor
-0.4
953
Tumor
-0.4
413
Tumor
-0.4
926
Normal
-0.4
463
Tumor
-0.4
723
Tumor
-0.4
354
Normal
-0.4
352
Normal
-0.4
228
Normal
-0.4
461
Tumor
-0.4
721
Tumor
-0.4
967
Tumor
-0.4
444
Normal
-0.4
1046
Normal
-0.4
192
Normal
-0.4
564
Normal
-0.5
648
Normal
-0.5
912
Normal
-0.5
572
Normal
-0.5
978
Normal
-0.5
498
Normal
-0.5
722
Normal
-0.5
383
Tumor
-0.5
392
Normal
-0.5
384
Normal
-0.5
913
Tumor
-0.5
877
Tumor
-0.5
744
Normal
-0.5
385
Tumor
-0.5
213
Tumor
-0.5
867
Tumor
-0.5
524
Normal
-0.5
563
Tumor
-0.5
958
Normal
-0.5
488
Normal
-0.5
367
Tumor
-0.5
558
Normal
-0.6
662
Normal
-0.6
284
Normal
-0.6
211
Tumor
-0.6
478
Normal
-0.6
1021
Tumor
-0.6
666
Normal
-0.6
923
Tumor
-0.6
553
Tumor
-0.6
487
Tumor
-0.6
965
Tumor
-0.6
491
Tumor
-0.6
217
Tumor
-0.6
917
Tumor
-0.6
741
Tumor
-0.6
536
Normal
-0.6
943
Tumor
-0.6
351
Tumor
-0.7
664
Normal
-0.7
975
Tumor
-0.7
1044
Normal
-0.7
695
Tumor
-0.7
223
Tumor
-0.7
814
Normal
-0.7
343
Tumor
-0.7
355
Tumor
-0.7
921
Tumor
-0.8
535
Tumor
-0.8
977
Tumor
-0.8
283
Tumor
-0.8
785
Tumor
-0.8
983
Tumor
-0.8
224
Normal
-0.8
393
Tumor
-0.8
455
Tumor
-0.8
813
Tumor
-0.8
221
Tumor
-0.8
571
Tumor
-0.9
285
Tumor
-0.9
431
Tumor
-0.9
517
Tumor
-0.9
297
Tumor
-0.9
527
Tumor
-0.9
963
Tumor
-0.9
817
Tumor
-0.9
311
Tumor
-0.9
357
Tumor
-0.9
277
Tumor
-0.9
661
Tumor
-0.9
881
Tumor
-0.9
391
Tumor
-0.9
672
Normal
-1.0
713
Tumor
-1.0
447
Tumor
-1.0
647
Tumor
-1.0
227
Tumor
-1.0
665
Tumor
-1.1
523
Tumor
-1.1
671
Tumor
-1.1
777
Tumor
-1.1
271
Tumor
-1.1
727
Tumor
-1.2
815
Tumor
-1.2
737
Tumor
-1.2
331
Tumor
-1.2
863
Tumor
-1.3
573
Tumor
-1.3
131
Tumor
-1.4
545
Tumor
-1.4
724
Normal
-1.5
743
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
