We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM55 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
105.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
105.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
104.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
63.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
58.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
56.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
53.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
52.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
52.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
51.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
51.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
50.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
48.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
48.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
45.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
44.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
43.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
41.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
41.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
41.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
40.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
40.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
38.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
38.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
36.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
36.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
36.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
34.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
33.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
30.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
27.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM55 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.3
Number of samples
231
Samples
Sample
Description
TPM
DO45169
0 years, male, NA, stage:3, alive, 1350 days
146.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
123.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
112.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
112.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
103.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
94.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
93.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
89.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
88.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
84.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
71.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
69.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
68.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
64.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
61.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
58.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
58.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
57.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
55.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
55.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
54.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
53.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
52.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
51.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
51.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
51.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
50.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
50.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
49.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
49.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
48.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
47.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
47.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
44.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
43.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
40.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
40.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
39.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
36.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
35.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
35.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
35.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
34.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
31.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
223
Tumor
2.3
851
Tumor
2.1
267
Tumor
2.0
187
Tumor
2.0
477
Tumor
1.8
135
Tumor
1.6
387
Tumor
1.6
557
Tumor
1.3
713
Tumor
1.3
745
Tumor
1.2
413
Tumor
1.2
128
Normal
0.8
363
Tumor
0.8
278
Normal
0.8
443
Tumor
0.8
327
Tumor
0.8
113
Tumor
0.8
112
Tumor
0.7
955
Tumor
0.7
925
Tumor
0.7
714
Normal
0.6
376
Normal
0.6
353
Tumor
0.6
967
Tumor
0.6
232
Normal
0.6
421
Tumor
0.6
937
Tumor
0.5
642
Normal
0.5
558
Normal
0.5
362
Normal
0.5
314
Normal
0.5
136
Normal
0.4
1014
Normal
0.4
445
Tumor
0.4
466
Normal
0.4
728
Normal
0.4
816
Normal
0.4
564
Normal
0.4
1028
Normal
0.4
616
Normal
0.4
648
Normal
0.4
722
Normal
0.4
298
Normal
0.4
312
Normal
0.4
1041
Tumor
0.3
145
Tumor
0.3
132
Normal
0.3
865
Tumor
0.3
923
Tumor
0.3
1022
Normal
0.3
138
Normal
0.3
357
Tumor
0.3
513
Tumor
0.3
494
Normal
0.3
514
Normal
0.3
572
Normal
0.3
172
Normal
0.3
384
Normal
0.3
635
Tumor
0.2
468
Normal
0.2
114
Normal
0.2
857
Tumor
0.2
738
Normal
0.2
147
Tumor
0.2
464
Normal
0.2
456
Normal
0.2
285
Tumor
0.2
1025
Tumor
0.2
824
Normal
0.2
481
Tumor
0.2
525
Tumor
0.2
952
Normal
0.2
257
Tumor
0.2
465
Tumor
0.2
1016
Normal
0.2
474
Normal
0.2
148
Normal
0.2
185
Tumor
0.2
534
Normal
0.2
574
Normal
0.2
568
Normal
0.2
123
Tumor
0.2
488
Normal
0.1
396
Normal
0.1
261
Tumor
0.1
528
Normal
0.1
452
Normal
0.1
554
Normal
0.1
953
Tumor
0.1
721
Tumor
0.1
341
Tumor
0.1
976
Normal
0.1
141
Tumor
0.1
484
Normal
0.1
672
Normal
0.1
1032
Normal
0.1
366
Normal
0.1
883
Tumor
0.1
146
Normal
0.1
313
Tumor
0.1
142
Normal
0.1
388
Normal
0.1
571
Tumor
0.1
618
Normal
0.1
696
Normal
0.1
423
Tumor
0.0
368
Normal
0.0
866
Normal
0.0
867
Tumor
0.0
268
Normal
0.0
546
Normal
0.0
617
Tumor
0.0
744
Normal
0.0
214
Normal
0.0
478
Normal
0.0
878
Normal
0.0
944
Normal
0.0
352
Normal
0.0
984
Normal
0.0
332
Normal
0.0
344
Normal
-0.1
391
Tumor
-0.1
615
Tumor
-0.1
526
Normal
-0.1
978
Normal
-0.1
533
Tumor
-0.1
746
Normal
-0.1
567
Tumor
-0.1
446
Normal
-0.1
515
Tumor
-0.1
262
Normal
-0.1
221
Tumor
-0.1
473
Tumor
-0.1
162
Normal
-0.1
527
Tumor
-0.1
258
Normal
-0.1
393
Tumor
-0.1
422
Normal
-0.1
127
Tumor
-0.1
1045
Tumor
-0.1
196
Normal
-0.1
628
Normal
-0.1
482
Normal
-0.1
823
Tumor
-0.1
448
Normal
-0.1
375
Tumor
-0.1
951
Tumor
-0.1
882
Normal
-0.1
975
Tumor
-0.1
188
Normal
-0.2
411
Tumor
-0.2
451
Tumor
-0.2
938
Normal
-0.2
186
Normal
-0.2
1043
Tumor
-0.2
271
Tumor
-0.2
222
Normal
-0.2
914
Normal
-0.2
921
Tumor
-0.2
426
Normal
-0.2
536
Normal
-0.2
641
Tumor
-0.2
433
Tumor
-0.2
224
Normal
-0.2
727
Tumor
-0.2
272
Normal
-0.2
963
Tumor
-0.2
981
Tumor
-0.2
664
Normal
-0.2
428
Normal
-0.2
492
Normal
-0.2
461
Tumor
-0.2
355
Tumor
-0.2
414
Normal
-0.2
523
Tumor
-0.2
436
Normal
-0.3
191
Tumor
-0.3
161
Tumor
-0.3
131
Tumor
-0.3
666
Normal
-0.3
777
Tumor
-0.3
913
Tumor
-0.3
463
Tumor
-0.3
661
Tumor
-0.3
277
Tumor
-0.3
444
Normal
-0.3
386
Normal
-0.3
858
Normal
-0.3
284
Normal
-0.3
977
Tumor
-0.3
695
Tumor
-0.3
412
Normal
-0.3
968
Normal
-0.3
627
Tumor
-0.3
228
Normal
-0.3
716
Normal
-0.3
491
Tumor
-0.3
125
Tumor
-0.3
863
Tumor
-0.3
424
Normal
-0.3
195
Tumor
-0.3
462
Normal
-0.3
126
Normal
-0.4
818
Normal
-0.4
741
Tumor
-0.4
636
Normal
-0.4
864
Normal
-0.4
427
Tumor
-0.4
212
Normal
-0.4
786
Normal
-0.4
394
Normal
-0.4
535
Tumor
-0.4
778
Normal
-0.4
662
Normal
-0.4
498
Normal
-0.4
912
Normal
-0.4
356
Normal
-0.4
487
Tumor
-0.4
358
Normal
-0.4
472
Normal
-0.4
297
Tumor
-0.4
431
Tumor
-0.4
111
Normal
-0.4
553
Tumor
-0.4
982
Normal
-0.4
217
Tumor
-0.4
686
Normal
-0.5
392
Normal
-0.5
137
Tumor
-0.5
213
Tumor
-0.5
124
Normal
-0.5
756
Normal
-0.5
524
Normal
-0.5
868
Normal
-0.5
814
Normal
-0.5
286
Normal
-0.5
911
Tumor
-0.5
227
Tumor
-0.5
697
Tumor
-0.5
1015
Tumor
-0.5
983
Tumor
-0.5
663
Tumor
-0.5
852
Normal
-0.5
432
Normal
-0.5
698
Normal
-0.6
342
Normal
-0.6
354
Normal
-0.6
715
Tumor
-0.6
647
Tumor
-0.6
395
Tumor
-0.6
964
Normal
-0.6
425
Tumor
-0.6
218
Normal
-0.6
518
Normal
-0.6
171
Tumor
-0.6
435
Tumor
-0.6
455
Tumor
-0.6
813
Tumor
-0.6
861
Tumor
-0.6
1026
Normal
-0.6
918
Normal
-0.6
361
Tumor
-0.6
343
Tumor
-0.7
956
Normal
-0.7
493
Tumor
-0.7
815
Tumor
-0.7
916
Normal
-0.7
957
Tumor
-0.7
573
Tumor
-0.7
884
Normal
-0.7
1046
Normal
-0.7
665
Tumor
-0.7
817
Tumor
-0.7
415
Tumor
-0.7
874
Normal
-0.7
954
Normal
-0.7
497
Tumor
-0.8
537
Tumor
-0.8
231
Tumor
-0.8
383
Tumor
-0.8
516
Normal
-0.8
742
Normal
-0.8
538
Normal
-0.8
517
Tumor
-0.8
311
Tumor
-0.8
434
Normal
-0.8
737
Tumor
-0.9
926
Normal
-0.9
328
Normal
-0.9
563
Tumor
-0.9
924
Normal
-0.9
483
Tumor
-0.9
723
Tumor
-0.9
331
Tumor
-0.9
755
Tumor
-0.9
283
Tumor
-1.0
192
Normal
-1.0
922
Normal
-1.0
943
Tumor
-1.0
671
Tumor
-1.0
447
Tumor
-1.0
1044
Normal
-1.0
416
Normal
-1.1
385
Tumor
-1.1
1031
Tumor
-1.1
1042
Normal
-1.1
966
Normal
-1.1
873
Tumor
-1.2
471
Tumor
-1.2
862
Normal
-1.2
365
Tumor
-1.2
958
Normal
-1.3
724
Normal
-1.3
467
Tumor
-1.3
965
Tumor
-1.3
785
Tumor
-1.4
1013
Tumor
-1.4
211
Tumor
-1.4
881
Tumor
-1.4
364
Normal
-1.4
685
Tumor
-1.4
351
Tumor
-1.5
877
Tumor
-1.6
545
Tumor
-1.6
917
Tumor
-1.7
1021
Tumor
-1.9
915
Tumor
-1.9
743
Tumor
-2.0
1027
Tumor
-2.0
367
Tumor
-2.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.