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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
33.5
nTPM
HPA Brain:
143.0
nTPM
GTEx:
33.5
nTPM
FANTOM5:
132.0
Scaled Tags Per Million
Pig:
49.5
nTPM
Mouse:
22.1
nTPM
Allen mouse:
4.7
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
143.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 129.0
2666
Male, age 74, left hemisphere
158.6
2019
Male, age 18, unknown
157.8
2586
Male, age 75, left hemisphere
149.7
2411
Female, age 72, unknown
127.8
2828
Female, age 72, unknown
127.0
1830
Male, age 51, unknown
126.9
1833
Male, age 53, unknown
125.0
1827
Male, age 72, unknown
121.3
1870
Female, age 42, unknown
115.9
2219
Male, age 76, both hemispheres
80.0
Dorsal raphe nucleus nTPM: 111.3
2750
Male, age 76, both hemispheres
126.6
1828
Male, age 53, unknown
116.4
2016
Female, age 72, unknown
111.4
2047
Male, age 72, unknown
107.4
2298
Female, age 72, unknown
94.7
Inferior colliculus nTPM: 119.0
1848
Female, age 42, unknown
128.2
2849
Male, age 72, unknown
122.7
1890
Male, age 53, unknown
119.7
2097
Female, age 72, unknown
105.4
Median raphe nucleus nTPM: 96.9
2220
Male, age 76, midline
96.9
Periaquaductal grey, anterior nTPM: 107.7
2502
Female, age 75, unknown
120.4
1795
Male, age 51, unknown
102.1
1947
Male, age 18, unknown
100.6
Periaquaductal grey, dorsal nTPM: 104.4
2464
Female, age 72, unknown
118.8
1831
Male, age 72, unknown
106.8
1840
Male, age 53, unknown
100.8
2850
Male, age 76, both hemispheres
91.3
Periaquaductal grey, lateral nTPM: 101.6
2140
Male, age 76, both hemispheres
104.8
2272
Male, age 74, both hemispheres
100.8
2053
Male, age 18, unknown
99.1
Pretectal area nTPM: 121.8
1817
Female, age 42, unknown
153.8
2007
Male, age 72, unknown
146.7
1815
Male, age 53, unknown
138.9
1816
Male, age 51, unknown
133.7
1944
Female, age 72, unknown
131.7
2407
Male, age 75, both hemispheres
123.8
2316
Male, age 76, right hemisphere
112.0
2825
Male, age 18, unknown
109.3
2667
Female, age 75, unknown
107.8
2224
Female, age 72, unknown
92.5
2273
Male, age 74, both hemispheres
89.1
Red nucleus nTPM: 143.0
2588
Male, age 74, left hemisphere
177.8
2785
Male, age 18, unknown
151.9
1821
Female, age 72, unknown
148.1
2503
Female, age 72, unknown
144.0
1865
Male, age 51, unknown
142.3
2823
Male, age 76, right hemisphere
140.7
2769
Male, age 72, unknown
140.0
1904
Male, age 53, unknown
138.7
2227
Male, age 72, unknown
136.7
1954
Female, age 42, unknown
135.0
2584
Male, age 75, left hemisphere
134.9
2725
Female, age 75, unknown
125.8
Substantia nigra nTPM: 134.1
2665
Male, age 74, both hemispheres
178.0
2583
Male, age 75, right hemisphere
142.2
1851
Male, age 51, unknown
136.3
2590
Female, age 75, unknown
133.9
2409
Female, age 72, unknown
132.4
1889
Female, age 72, unknown
129.3
2699
Male, age 18, unknown
126.9
1916
Female, age 42, unknown
126.0
1941
Male, age 53, unknown
122.0
2241
Male, age 72, unknown
113.9
Superior colliculus nTPM: 126.0
2668
Female, age 75, unknown
140.7
2587
Male, age 74, left hemisphere
132.7
1995
Male, age 72, unknown
129.7
2087
Female, age 72, unknown
129.4
1913
Female, age 42, unknown
125.1
2664
Male, age 75, both hemispheres
123.9
1839
Male, age 51, unknown
123.0
1796
Male, age 53, unknown
122.0
2261
Male, age 18, unknown
119.6
1895
Male, age 76, right hemisphere
113.7
Ventral tegmental area nTPM: 114.6
2410
Female, age 72, unknown
126.2
2223
Female, age 72, unknown
121.1
2021
Male, age 53, unknown
113.0
1915
Female, age 42, unknown
112.7
1942
Male, age 51, unknown
108.0
2218
Male, age 76, both hemispheres
106.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
33.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 33.5
Samples: 139
Max nTPM: 78.1
Min nTPM: 4.6
Std nTPM: 11.1
Median nTPM: 32.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
78.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
67.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
65.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
60.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
58.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
57.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
52.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
49.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
49.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
48.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
48.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
47.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
47.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
46.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
46.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
45.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
44.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
44.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
44.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
43.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
43.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
43.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
43.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
43.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
43.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
43.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
42.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
42.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
42.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
42.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
41.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
41.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
41.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
41.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
40.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
40.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
39.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
39.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
39.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
39.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
39.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
38.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
38.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
37.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
37.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
37.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
36.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
36.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
36.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
35.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
35.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
35.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
35.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
34.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
34.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
34.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
34.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
33.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
33.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
33.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
33.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
33.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
32.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
32.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
32.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
32.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
32.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
32.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
32.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
32.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
31.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
31.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
31.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
31.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
31.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
31.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
31.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
31.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
30.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
30.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
30.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
30.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
30.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
30.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
30.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
29.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
29.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
29.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
29.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
29.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
29.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
28.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
28.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
28.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
28.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
28.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
28.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
28.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
28.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
28.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
26.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
26.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
26.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
26.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
25.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
25.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
25.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
25.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
25.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
24.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
24.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
24.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
24.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
24.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
23.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
23.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
23.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
23.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
23.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
22.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
22.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
21.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
21.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
21.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
21.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
21.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
20.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
20.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
19.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
19.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
18.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
18.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
17.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
17.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
17.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
15.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
9.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
9.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
4.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 22.1
Samples: 4
Max nTPM: 22.8
Min nTPM: 21.1
Sample A
Male
21.7
Sample B
Male
21.1
Sample C
Female
22.8
Sample D
Female
22.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.