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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
32.4
nTPM
HPA Brain:
129.6
nTPM
GTEx:
32.4
nTPM
FANTOM5:
98.2
Scaled Tags Per Million
Pig:
55.8
nTPM
Mouse:
48.6
nTPM
Allen mouse:
10.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA024702
Antibody CAB017041
Glial cells
Not detected
Medium
Neuronal cells
Not detected
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
129.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 116.3
1898
Male, age 80, left hemisphere
130.7
2529
Female, age 94, left hemisphere
119.5
2621
Female, age 67, right hemisphere
118.5
1855
Male, age 76, left hemisphere
116.3
1911
Female, age 85, right hemisphere
109.8
2148
Female, age 91, left hemisphere
103.0
Dentate gyrus nTPM: 117.1
2531
Female, age 67, both hemispheres
127.9
2530
Female, age 94, left hemisphere
124.1
2010
Male, age 76, both hemispheres
122.7
1927
Female, age 91, both hemispheres
119.0
2246
Female, age 85, both hemispheres
111.0
2528
Male, age 74, both hemispheres
97.9
Entorhinal gyrus nTPM: 124.1
2764
Male, age 80, right hemisphere
138.5
2613
Female, age 94, left hemisphere
127.5
1787
Male, age 76, left hemisphere
123.0
2117
Female, age 91, right hemisphere
121.9
2686
Male, age 75, right hemisphere
120.8
1938
Female, age 85, left hemisphere
113.0
Hippocampus, CA1 nTPM: 122.2
1873
Female, age 85, both hemispheres
141.1
2749
Male, age 80, left hemisphere
136.0
2045
Male, age 76, both hemispheres
127.7
2527
Male, age 74, both hemispheres
109.1
2082
Female, age 91, right hemisphere
96.8
Hippocampus, CA2 nTPM: 117.9
1963
Male, age 80, left hemisphere
151.7
1940
Female, age 85, left hemisphere
127.4
1892
Male, age 76, both hemispheres
116.9
2437
Female, age 94, left hemisphere
110.4
2113
Female, age 91, right hemisphere
102.6
2249
Male, age 74, both hemispheres
98.4
Hippocampus, CA3 nTPM: 124.1
2620
Female, age 94, left hemisphere
143.9
1867
Male, age 76, both hemispheres
124.9
2861
Female, age 67, both hemispheres
123.1
1891
Female, age 85, both hemispheres
121.9
2436
Male, age 74, both hemispheres
115.7
2137
Male, age 80, left hemisphere
114.8
Parahippocampal cortex nTPM: 117.5
1850
Male, age 80, both hemispheres
135.3
1933
Female, age 85, both hemispheres
129.2
2018
Male, age 76, both hemispheres
118.2
2622
Female, age 67, right hemisphere
116.3
2532
Female, age 72, left hemisphere
115.1
2693
Female, age 94, both hemispheres
114.1
1990
Female, age 91, right hemisphere
113.8
2692
Male, age 74, both hemispheres
113.5
2245
Female, age 91, both hemispheres
112.6
2250
Female, age 67, right hemisphere
106.6
Perirhinal gyrus nTPM: 129.6
1841
Female, age 85, right hemisphere
150.7
1794
Male, age 80, right hemisphere
138.8
2521
Female, age 94, right hemisphere
132.3
2848
Male, age 76, right hemisphere
113.7
1847
Female, age 91, left hemisphere
112.3
Subiculum nTPM: 116.7
1901
Male, age 80, both hemispheres
124.3
2042
Male, age 76, both hemispheres
123.8
1977
Female, age 85, both hemispheres
123.6
2619
Male, age 74, both hemispheres
120.8
2438
Female, age 94, left hemisphere
109.2
2729
Female, age 91, right hemisphere
98.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 32.4
Samples: 197
Max nTPM: 87.0
Min nTPM: 7.8
Std nTPM: 11.3
Median nTPM: 31.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
87.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
68.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
62.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
61.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
58.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
58.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
56.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
54.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
51.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
51.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
50.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
50.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
49.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
49.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
48.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
48.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
48.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
48.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
47.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
46.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
46.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
45.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
44.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
44.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
44.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
43.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
42.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
42.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
42.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
42.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
42.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
41.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
41.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
41.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
41.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
41.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
41.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
41.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
41.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
40.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
40.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
40.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
39.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
39.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
39.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
39.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
39.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
39.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
39.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
38.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
38.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
38.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
38.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
38.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
38.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
38.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
37.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
37.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
37.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
37.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
36.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
36.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
36.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
36.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
36.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
36.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
36.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
35.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
35.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
35.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
35.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
35.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
34.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
34.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
34.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
34.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
34.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
34.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
34.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
34.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
34.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
34.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
34.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
33.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
33.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
33.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
33.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
33.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
33.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
33.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
33.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
32.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
32.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
32.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
32.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
32.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
31.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
31.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
31.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
31.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
31.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
31.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
31.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
31.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
31.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
30.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
30.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
30.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
30.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
30.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
30.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
30.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
30.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
29.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
29.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
29.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
29.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
29.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
28.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
28.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
28.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
28.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
28.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
28.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
28.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
28.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
28.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
28.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
28.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
27.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
27.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
27.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
27.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
27.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
26.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
26.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
26.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
26.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
25.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
25.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
25.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
25.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
25.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
25.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
25.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
25.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
24.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
24.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
24.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
24.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
24.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
24.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
23.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
23.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
23.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
23.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
23.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
22.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
22.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
22.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
22.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
21.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
21.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
21.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
21.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
21.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
21.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
21.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
21.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
20.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
20.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
20.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
20.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
20.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
20.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
20.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
19.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
19.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
19.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
19.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
18.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
18.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
17.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
17.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
17.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
16.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
16.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
15.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
15.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
14.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
12.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
12.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
11.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
11.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
10.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
9.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
7.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 48.6
Samples: 4
Max nTPM: 55.2
Min nTPM: 41.1
Sample A
Male
49.5
Sample B
Male
48.4
Sample C
Female
41.1
Sample D
Female
55.2
Hippocampal formation nTPM: 30.4
Samples: 4
Max nTPM: 32.3
Min nTPM: 27.9
Sample A
Male
32.3
Sample B
Male
30.6
Sample C
Female
30.9
Sample D
Female
27.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.