HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:22.3 nTPM
HPA Brain:34.4 nTPM
GTEx:22.3 nTPM
FANTOM5:41.1 Scaled Tags Per Million
Pig:27.7 nTPM
Mouse:47.3 nTPM
Allen mouse:4.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023646Antibody HPA023733Antibody CAB017033
Glial cells Not detectedNot detectedLow
Neuronal cells LowMediumHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 34.4
Sample id Sample description nTPM
Hippocampus
nTPM: 32.8
1898 Male, age 80, left hemisphere 39.1
2529 Female, age 94, left hemisphere 35.6
1855 Male, age 76, left hemisphere 33.8
1911 Female, age 85, right hemisphere 30.0
2621 Female, age 67, right hemisphere 29.3
2148 Female, age 91, left hemisphere 28.8
Dentate gyrus
nTPM: 29.1
2010 Male, age 76, both hemispheres 40.2
2530 Female, age 94, left hemisphere 30.9
1927 Female, age 91, both hemispheres 29.2
2246 Female, age 85, both hemispheres 27.7
2528 Male, age 74, both hemispheres 25.1
2531 Female, age 67, both hemispheres 21.9
Entorhinal gyrus
nTPM: 30.4
1787 Male, age 76, left hemisphere 35.6
2764 Male, age 80, right hemisphere 34.0
2117 Female, age 91, right hemisphere 32.5
1938 Female, age 85, left hemisphere 30.6
2686 Male, age 75, right hemisphere 25.9
2613 Female, age 94, left hemisphere 23.7
Hippocampus, CA1
nTPM: 34.3
2749 Male, age 80, left hemisphere 51.2
1873 Female, age 85, both hemispheres 34.5
2045 Male, age 76, both hemispheres 31.4
2527 Male, age 74, both hemispheres 29.6
2082 Female, age 91, right hemisphere 24.8
Hippocampus, CA2
nTPM: 32.7
1892 Male, age 76, both hemispheres 42.4
1963 Male, age 80, left hemisphere 38.3
1940 Female, age 85, left hemisphere 34.8
2249 Male, age 74, both hemispheres 30.0
2437 Female, age 94, left hemisphere 26.8
2113 Female, age 91, right hemisphere 23.5
Hippocampus, CA3
nTPM: 31.7
1867 Male, age 76, both hemispheres 40.1
2137 Male, age 80, left hemisphere 36.4
1891 Female, age 85, both hemispheres 34.0
2436 Male, age 74, both hemispheres 30.8
2861 Female, age 67, both hemispheres 28.7
2620 Female, age 94, left hemisphere 20.0
Parahippocampal cortex
nTPM: 29.6
1933 Female, age 85, both hemispheres 35.0
1850 Male, age 80, both hemispheres 33.5
2018 Male, age 76, both hemispheres 32.2
1990 Female, age 91, right hemisphere 29.8
2532 Female, age 72, left hemisphere 28.7
2245 Female, age 91, both hemispheres 28.6
2250 Female, age 67, right hemisphere 28.2
2622 Female, age 67, right hemisphere 27.4
2692 Male, age 74, both hemispheres 26.3
2693 Female, age 94, both hemispheres 26.3
Perirhinal gyrus
nTPM: 34.4
1841 Female, age 85, right hemisphere 37.2
1847 Female, age 91, left hemisphere 36.8
1794 Male, age 80, right hemisphere 36.2
2521 Female, age 94, right hemisphere 34.3
2848 Male, age 76, right hemisphere 27.3
Subiculum
nTPM: 30.5
1977 Female, age 85, both hemispheres 37.4
1901 Male, age 80, both hemispheres 36.8
2042 Male, age 76, both hemispheres 31.1
2438 Female, age 94, left hemisphere 26.7
2619 Male, age 74, both hemispheres 25.5
2729 Female, age 91, right hemisphere 25.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 22.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.3
Samples: 197

Max nTPM: 42.1
Min nTPM: 13.8
Std nTPM: 4.5
Median nTPM: 21.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 42.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 35.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 35.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 34.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 33.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 32.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 31.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 31.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 31.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 30.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 30.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 41.1
FF:10169-103B7 60 years, female 44.6
FF:10153-102I9 76 years, female 37.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 27.7
Pig sample Sample description nTPM
Subiculum
nTPM: 23.4
Samples: 4

Max nTPM: 28.8
Min nTPM: 21.1
Sample A Female 28.8
Sample B Female 21.2
Sample C Male 21.1
Sample D Male 22.5
Dorsal hippocampus
nTPM: 27.8
Samples: 4

Max nTPM: 33.1
Min nTPM: 23.0
Sample A Female 33.1
Sample B Female 27.2
Sample C Male 27.7
Sample D Male 23.0
Entorhinal cortex
nTPM: 25.3
Samples: 4

Max nTPM: 27.9
Min nTPM: 22.6
Sample A Female 27.7
Sample B Female 27.9
Sample C Male 22.6
Sample D Male 23.0
Ventral hippocampus
nTPM: 25.5
Samples: 4

Max nTPM: 27.5
Min nTPM: 19.7
Sample A Female 27.1
Sample B Female 19.7
Sample C Male 27.5
Sample D Male 27.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 47.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.7
Samples: 4

Max nTPM: 48.1
Min nTPM: 37.4
Sample A Male 39.3
Sample B Male 46.0
Sample C Female 48.1
Sample D Female 37.4
Hippocampal formation
nTPM: 47.3
Samples: 4

Max nTPM: 57.6
Min nTPM: 43.5
Sample A Male 57.6
Sample B Male 43.5
Sample C Female 43.5
Sample D Female 44.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.6
69817366 Antisense, RP_050510_03_C01, Mouse strain C57BL/6J (56 days, male) 6.6
76115741 Antisense, RP_060620_02_C09, Mouse strain C57BL/6J (56 days, male) 2.5

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