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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OGT is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
33.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
32.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
28.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OGT is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.1
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
207.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
202.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
198.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
168.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
166.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
164.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
128.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
123.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
122.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
114.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
108.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
105.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
102.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
98.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
94.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
94.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
93.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
93.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
92.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
90.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
85.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
84.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
79.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
77.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
77.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
76.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
76.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
75.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
74.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
73.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
73.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
73.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
72.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
72.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
70.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
67.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
66.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
65.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
65.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
65.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
65.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
64.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
63.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
63.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
63.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
62.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
62.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
62.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
61.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
60.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
60.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
60.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
59.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
59.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
59.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
58.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
58.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
57.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
56.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
56.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
55.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
55.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
55.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
54.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
54.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
54.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
54.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
54.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
54.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
53.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
53.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
53.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
53.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
52.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
52.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
51.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
51.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
51.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
51.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
51.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
51.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
51.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
50.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
50.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
49.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
49.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
49.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
49.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
48.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
48.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
48.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
48.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
47.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
47.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
47.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
46.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
46.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
45.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
45.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
45.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
45.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
44.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
44.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
44.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
44.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
43.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
43.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
43.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
43.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
43.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
43.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
43.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
42.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
42.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
42.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
42.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
42.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
41.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
41.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
40.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
40.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
40.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
39.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
39.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
39.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
38.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
38.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
38.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
37.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
37.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
37.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
36.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
36.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
36.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
36.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
34.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
32.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
31.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
31.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
31.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
31.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
30.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
27.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
0.7
937
Tumor
0.6
965
Tumor
0.6
537
Tumor
0.6
983
Tumor
0.5
525
Tumor
0.5
851
Tumor
0.5
123
Tumor
0.5
724
Normal
0.5
865
Tumor
0.4
112
Tumor
0.4
431
Tumor
0.4
1013
Tumor
0.4
665
Tumor
0.4
535
Tumor
0.4
545
Tumor
0.4
647
Tumor
0.4
125
Tumor
0.4
285
Tumor
0.4
473
Tumor
0.4
331
Tumor
0.4
1021
Tumor
0.4
127
Tumor
0.4
185
Tumor
0.4
533
Tumor
0.4
487
Tumor
0.4
411
Tumor
0.3
443
Tumor
0.3
573
Tumor
0.3
367
Tumor
0.3
343
Tumor
0.3
497
Tumor
0.3
211
Tumor
0.3
351
Tumor
0.3
1027
Tumor
0.3
671
Tumor
0.3
491
Tumor
0.3
391
Tumor
0.3
883
Tumor
0.3
425
Tumor
0.3
435
Tumor
0.2
427
Tumor
0.2
277
Tumor
0.2
357
Tumor
0.2
421
Tumor
0.2
483
Tumor
0.2
817
Tumor
0.2
313
Tumor
0.2
385
Tumor
0.2
715
Tumor
0.2
221
Tumor
0.2
861
Tumor
0.2
463
Tumor
0.2
314
Normal
0.2
553
Tumor
0.2
695
Tumor
0.2
743
Tumor
0.2
375
Tumor
0.2
161
Tumor
0.2
298
Normal
0.2
641
Tumor
0.2
257
Tumor
0.2
557
Tumor
0.2
137
Tumor
0.2
451
Tumor
0.2
231
Tumor
0.2
332
Normal
0.2
415
Tumor
0.2
217
Tumor
0.2
171
Tumor
0.2
523
Tumor
0.1
353
Tumor
0.1
342
Normal
0.1
741
Tumor
0.1
227
Tumor
0.1
113
Tumor
0.1
147
Tumor
0.1
477
Tumor
0.1
957
Tumor
0.1
131
Tumor
0.1
814
Normal
0.1
135
Tumor
0.1
615
Tumor
0.1
222
Normal
0.1
187
Tumor
0.1
617
Tumor
0.1
352
Normal
0.1
213
Tumor
0.1
635
Tumor
0.1
636
Normal
0.1
447
Tumor
0.1
218
Normal
0.1
493
Tumor
0.1
963
Tumor
0.1
232
Normal
0.1
873
Tumor
0.1
434
Normal
0.1
737
Tumor
0.1
355
Tumor
0.1
297
Tumor
0.1
311
Tumor
0.1
327
Tumor
0.1
1025
Tumor
0.1
1031
Tumor
0.1
428
Normal
0.1
423
Tumor
0.1
465
Tumor
0.1
467
Tumor
0.1
267
Tumor
0.1
966
Normal
0.1
145
Tumor
0.1
813
Tumor
0.1
723
Tumor
0.1
124
Normal
0.1
126
Normal
0.1
755
Tumor
0.1
921
Tumor
0.1
433
Tumor
0.1
384
Normal
0.1
354
Normal
0.1
258
Normal
0.1
471
Tumor
0.1
518
Normal
0.1
261
Tumor
0.1
278
Normal
0.1
426
Normal
0.1
881
Tumor
0.1
395
Tumor
0.1
721
Tumor
0.1
424
Normal
0.1
422
Normal
0.1
917
Tumor
0.1
141
Tumor
0.1
714
Normal
0.1
815
Tumor
0.1
628
Normal
0.1
271
Tumor
0.1
513
Tumor
0.0
744
Normal
0.0
563
Tumor
0.0
111
Normal
0.0
268
Normal
0.0
664
Normal
0.0
262
Normal
0.0
951
Tumor
0.0
162
Normal
0.0
666
Normal
0.0
492
Normal
0.0
925
Tumor
0.0
444
Normal
0.0
138
Normal
0.0
567
Tumor
0.0
728
Normal
0.0
564
Normal
0.0
344
Normal
0.0
358
Normal
0.0
393
Tumor
0.0
536
Normal
0.0
172
Normal
0.0
975
Tumor
0.0
967
Tumor
0.0
618
Normal
0.0
923
Tumor
0.0
456
Normal
0.0
436
Normal
0.0
915
Tumor
0.0
455
Tumor
0.0
978
Normal
0.0
366
Normal
0.0
146
Normal
0.0
1046
Normal
0.0
484
Normal
0.0
283
Tumor
0.0
722
Normal
0.0
777
Tumor
0.0
192
Normal
0.0
558
Normal
0.0
745
Tumor
0.0
396
Normal
0.0
466
Normal
0.0
312
Normal
0.0
663
Tumor
0.0
672
Normal
0.0
524
Normal
0.0
416
Normal
0.0
188
Normal
0.0
627
Tumor
0.0
446
Normal
0.0
114
Normal
0.0
462
Normal
0.0
727
Tumor
0.0
642
Normal
0.0
616
Normal
0.0
196
Normal
0.0
568
Normal
0.0
534
Normal
0.0
713
Tumor
0.0
272
Normal
0.0
488
Normal
0.0
1043
Tumor
0.0
186
Normal
0.0
448
Normal
0.0
461
Tumor
0.0
414
Normal
0.0
878
Normal
0.0
1022
Normal
0.0
223
Tumor
0.0
874
Normal
0.0
696
Normal
0.0
195
Tumor
0.0
468
Normal
0.0
943
Tumor
0.0
977
Tumor
0.0
214
Normal
0.0
191
Tumor
0.0
526
Normal
0.0
955
Tumor
0.0
472
Normal
0.0
554
Normal
0.0
914
Normal
0.0
341
Tumor
0.0
981
Tumor
0.0
464
Normal
0.0
976
Normal
0.0
392
Normal
0.0
648
Normal
0.0
517
Tumor
0.0
912
Normal
0.0
685
Tumor
0.0
387
Tumor
0.0
128
Normal
0.0
481
Tumor
0.0
913
Tumor
0.0
738
Normal
0.0
148
Normal
0.0
1026
Normal
0.0
574
Normal
0.0
478
Normal
0.0
1014
Normal
0.0
662
Normal
0.0
498
Normal
-0.1
528
Normal
-0.1
953
Tumor
-0.1
527
Tumor
-0.1
386
Normal
-0.1
756
Normal
-0.1
858
Normal
-0.1
368
Normal
-0.1
362
Normal
-0.1
142
Normal
-0.1
964
Normal
-0.1
482
Normal
-0.1
546
Normal
-0.1
1028
Normal
-0.1
383
Tumor
-0.1
884
Normal
-0.1
413
Tumor
-0.1
363
Tumor
-0.1
1044
Normal
-0.1
877
Tumor
-0.1
432
Normal
-0.1
514
Normal
-0.1
132
Normal
-0.1
862
Normal
-0.1
697
Tumor
-0.1
224
Normal
-0.1
474
Normal
-0.1
494
Normal
-0.1
361
Tumor
-0.1
786
Normal
-0.1
394
Normal
-0.1
956
Normal
-0.1
1042
Normal
-0.1
716
Normal
-0.1
538
Normal
-0.1
968
Normal
-0.1
867
Tumor
-0.1
412
Normal
-0.1
866
Normal
-0.1
778
Normal
-0.1
852
Normal
-0.1
922
Normal
-0.1
388
Normal
-0.1
686
Normal
-0.1
571
Tumor
-0.1
1041
Tumor
-0.1
882
Normal
-0.1
742
Normal
-0.1
823
Tumor
-0.1
982
Normal
-0.1
452
Normal
-0.1
516
Normal
-0.1
918
Normal
-0.1
136
Normal
-0.1
824
Normal
-0.1
818
Normal
-0.1
365
Tumor
-0.1
572
Normal
-0.1
984
Normal
-0.1
376
Normal
-0.1
1015
Tumor
-0.1
1032
Normal
-0.2
816
Normal
-0.2
284
Normal
-0.2
1016
Normal
-0.2
785
Tumor
-0.2
864
Normal
-0.2
1045
Tumor
-0.2
328
Normal
-0.2
698
Normal
-0.2
952
Normal
-0.2
515
Tumor
-0.2
364
Normal
-0.2
857
Tumor
-0.2
212
Normal
-0.2
356
Normal
-0.2
286
Normal
-0.2
938
Normal
-0.2
926
Normal
-0.2
916
Normal
-0.2
228
Normal
-0.2
746
Normal
-0.2
911
Tumor
-0.2
924
Normal
-0.2
944
Normal
-0.2
954
Normal
-0.2
868
Normal
-0.2
958
Normal
-0.2
863
Tumor
-0.3
445
Tumor
-0.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
