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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.4
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
2.0
463
Tumor
2.0
351
Tumor
2.0
743
Tumor
1.8
367
Tumor
1.7
517
Tumor
1.7
425
Tumor
1.7
535
Tumor
1.4
466
Normal
1.4
464
Normal
1.4
957
Tumor
1.3
951
Tumor
1.3
877
Tumor
1.3
468
Normal
1.3
131
Tumor
1.2
452
Normal
1.1
465
Tumor
1.1
661
Tumor
1.1
456
Normal
1.0
467
Tumor
1.0
447
Tumor
1.0
567
Tumor
1.0
983
Tumor
1.0
385
Tumor
0.9
917
Tumor
0.9
573
Tumor
0.8
313
Tumor
0.8
497
Tumor
0.8
975
Tumor
0.8
343
Tumor
0.8
297
Tumor
0.8
192
Normal
0.7
525
Tumor
0.7
112
Tumor
0.7
545
Tumor
0.7
1013
Tumor
0.7
865
Tumor
0.6
455
Tumor
0.6
943
Tumor
0.5
195
Tumor
0.5
393
Tumor
0.4
492
Normal
0.4
533
Tumor
0.4
523
Tumor
0.4
1025
Tumor
0.4
311
Tumor
0.4
214
Normal
0.4
813
Tumor
0.3
413
Tumor
0.3
124
Normal
0.3
851
Tumor
0.3
635
Tumor
0.3
524
Normal
0.3
451
Tumor
0.3
815
Tumor
0.3
125
Tumor
0.3
498
Normal
0.3
864
Normal
0.3
538
Normal
0.3
516
Normal
0.3
918
Normal
0.3
448
Normal
0.2
916
Normal
0.2
283
Tumor
0.2
491
Tumor
0.2
1042
Normal
0.2
426
Normal
0.2
874
Normal
0.2
434
Normal
0.2
428
Normal
0.2
224
Normal
0.2
114
Normal
0.2
954
Normal
0.2
536
Normal
0.2
312
Normal
0.1
868
Normal
0.1
424
Normal
0.1
196
Normal
0.1
344
Normal
0.1
298
Normal
0.1
422
Normal
0.1
314
Normal
0.1
111
Normal
0.1
926
Normal
0.1
421
Tumor
0.1
185
Tumor
0.1
923
Tumor
0.1
938
Normal
0.1
126
Normal
0.1
695
Tumor
0.1
514
Normal
0.1
414
Normal
0.1
526
Normal
0.1
277
Tumor
0.1
113
Tumor
0.1
474
Normal
0.1
944
Normal
0.1
1032
Normal
0.1
866
Normal
0.0
881
Tumor
0.0
924
Normal
0.0
956
Normal
0.0
352
Normal
0.0
1028
Normal
0.0
212
Normal
0.0
211
Tumor
0.0
697
Tumor
0.0
534
Normal
0.0
331
Tumor
0.0
698
Normal
0.0
412
Normal
0.0
922
Normal
0.0
146
Normal
0.0
527
Tumor
0.0
128
Normal
0.0
278
Normal
0.0
952
Normal
0.0
862
Normal
0.0
364
Normal
0.0
574
Normal
0.0
388
Normal
0.0
817
Tumor
0.0
354
Normal
0.0
858
Normal
0.0
518
Normal
0.0
785
Tumor
0.0
342
Normal
0.0
1021
Tumor
0.0
191
Tumor
0.0
1027
Tumor
0.0
127
Tumor
0.0
394
Normal
0.0
1044
Normal
-0.1
816
Normal
-0.1
662
Normal
-0.1
636
Normal
-0.1
223
Tumor
-0.1
1026
Normal
-0.1
1046
Normal
-0.1
478
Normal
-0.1
427
Tumor
-0.1
362
Normal
-0.1
878
Normal
-0.1
123
Tumor
-0.1
472
Normal
-0.1
332
Normal
-0.1
135
Tumor
-0.1
818
Normal
-0.1
484
Normal
-0.1
713
Tumor
-0.1
852
Normal
-0.1
494
Normal
-0.1
618
Normal
-0.1
132
Normal
-0.1
218
Normal
-0.1
356
Normal
-0.1
284
Normal
-0.1
925
Tumor
-0.1
737
Tumor
-0.1
386
Normal
-0.1
327
Tumor
-0.1
824
Normal
-0.1
444
Normal
-0.1
513
Tumor
-0.1
616
Normal
-0.2
222
Normal
-0.2
363
Tumor
-0.2
328
Normal
-0.2
982
Normal
-0.2
415
Tumor
-0.2
744
Normal
-0.2
368
Normal
-0.2
423
Tumor
-0.2
642
Normal
-0.2
227
Tumor
-0.2
1022
Normal
-0.2
228
Normal
-0.2
375
Tumor
-0.2
358
Normal
-0.2
416
Normal
-0.2
366
Normal
-0.2
966
Normal
-0.2
483
Tumor
-0.2
884
Normal
-0.2
471
Tumor
-0.2
493
Tumor
-0.2
217
Tumor
-0.2
515
Tumor
-0.2
396
Normal
-0.2
365
Tumor
-0.2
912
Normal
-0.2
981
Tumor
-0.2
488
Normal
-0.2
213
Tumor
-0.2
976
Normal
-0.3
432
Normal
-0.3
392
Normal
-0.3
965
Tumor
-0.3
617
Tumor
-0.3
984
Normal
-0.3
823
Tumor
-0.3
272
Normal
-0.3
563
Tumor
-0.3
395
Tumor
-0.3
572
Normal
-0.3
461
Tumor
-0.3
286
Normal
-0.3
553
Tumor
-0.3
615
Tumor
-0.3
383
Tumor
-0.3
554
Normal
-0.3
138
Normal
-0.3
958
Normal
-0.3
1014
Normal
-0.3
376
Normal
-0.3
627
Tumor
-0.3
1045
Tumor
-0.3
728
Normal
-0.3
672
Normal
-0.3
1015
Tumor
-0.3
1016
Normal
-0.3
882
Normal
-0.3
857
Tumor
-0.3
341
Tumor
-0.3
568
Normal
-0.4
921
Tumor
-0.4
141
Tumor
-0.4
355
Tumor
-0.4
724
Normal
-0.4
915
Tumor
-0.4
738
Normal
-0.4
387
Tumor
-0.4
746
Normal
-0.4
145
Tumor
-0.4
546
Normal
-0.4
446
Normal
-0.4
571
Tumor
-0.4
353
Tumor
-0.4
641
Tumor
-0.4
721
Tumor
-0.4
727
Tumor
-0.4
742
Normal
-0.4
968
Normal
-0.4
663
Tumor
-0.4
357
Tumor
-0.4
664
Normal
-0.4
142
Normal
-0.4
955
Tumor
-0.4
557
Tumor
-0.4
883
Tumor
-0.4
433
Tumor
-0.4
913
Tumor
-0.4
528
Normal
-0.4
558
Normal
-0.4
161
Tumor
-0.5
391
Tumor
-0.5
696
Normal
-0.5
628
Normal
-0.5
647
Tumor
-0.5
963
Tumor
-0.5
778
Normal
-0.5
564
Normal
-0.5
285
Tumor
-0.5
384
Normal
-0.5
473
Tumor
-0.5
715
Tumor
-0.5
436
Normal
-0.5
867
Tumor
-0.5
1043
Tumor
-0.5
671
Tumor
-0.5
462
Normal
-0.5
814
Normal
-0.5
723
Tumor
-0.5
666
Normal
-0.6
648
Normal
-0.6
147
Tumor
-0.6
221
Tumor
-0.6
431
Tumor
-0.6
1041
Tumor
-0.6
686
Normal
-0.6
257
Tumor
-0.6
482
Normal
-0.6
665
Tumor
-0.6
978
Normal
-0.6
861
Tumor
-0.6
261
Tumor
-0.6
914
Normal
-0.6
271
Tumor
-0.6
863
Tumor
-0.6
716
Normal
-0.7
977
Tumor
-0.7
937
Tumor
-0.7
1031
Tumor
-0.7
477
Tumor
-0.7
487
Tumor
-0.7
953
Tumor
-0.7
148
Normal
-0.7
232
Normal
-0.7
435
Tumor
-0.7
262
Normal
-0.7
137
Tumor
-0.8
714
Normal
-0.8
685
Tumor
-0.8
873
Tumor
-0.8
741
Tumor
-0.8
411
Tumor
-0.8
186
Normal
-0.8
162
Normal
-0.8
445
Tumor
-0.8
268
Normal
-0.8
964
Normal
-0.8
443
Tumor
-0.9
361
Tumor
-0.9
722
Normal
-0.9
188
Normal
-0.9
481
Tumor
-0.9
967
Tumor
-0.9
911
Tumor
-0.9
258
Normal
-0.9
172
Normal
-0.9
231
Tumor
-1.0
136
Normal
-1.0
756
Normal
-1.1
171
Tumor
-1.1
786
Normal
-1.1
745
Tumor
-1.1
187
Tumor
-1.1
755
Tumor
-1.2
777
Tumor
-1.3
267
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
