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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MEPCE is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
78.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
57.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
55.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
54.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
50.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
48.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
48.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
46.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
46.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
46.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
45.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
43.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
41.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
40.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
39.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
37.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
35.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
34.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
34.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
33.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
30.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
29.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
27.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
26.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MEPCE is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.9
Number of samples
231
Samples
Sample
Description
TPM
DO23516
0 years, male, NA, stage:3, dead, 20 days
95.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
94.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
69.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
68.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
65.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
63.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
61.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
61.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
59.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
57.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
56.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
53.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
51.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
50.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
48.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
46.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
45.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
45.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
44.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
44.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
43.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
43.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
42.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
42.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
40.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
40.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
39.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
39.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
38.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
38.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
36.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
34.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
34.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
33.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
33.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
31.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
31.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
30.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
29.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.4
351
Tumor
1.1
425
Tumor
1.0
957
Tumor
0.9
171
Tumor
0.8
1013
Tumor
0.8
635
Tumor
0.8
567
Tumor
0.8
411
Tumor
0.7
865
Tumor
0.7
1041
Tumor
0.7
497
Tumor
0.7
925
Tumor
0.7
743
Tumor
0.7
161
Tumor
0.7
367
Tumor
0.7
267
Tumor
0.7
473
Tumor
0.6
387
Tumor
0.6
493
Tumor
0.6
615
Tumor
0.6
977
Tumor
0.6
983
Tumor
0.6
1021
Tumor
0.5
423
Tumor
0.5
313
Tumor
0.5
481
Tumor
0.5
533
Tumor
0.5
665
Tumor
0.5
355
Tumor
0.5
545
Tumor
0.5
427
Tumor
0.5
375
Tumor
0.5
465
Tumor
0.5
123
Tumor
0.5
861
Tumor
0.5
661
Tumor
0.5
435
Tumor
0.5
537
Tumor
0.5
451
Tumor
0.5
535
Tumor
0.5
331
Tumor
0.5
785
Tumor
0.5
431
Tumor
0.5
695
Tumor
0.4
911
Tumor
0.4
477
Tumor
0.4
715
Tumor
0.4
883
Tumor
0.4
523
Tumor
0.4
395
Tumor
0.4
647
Tumor
0.4
443
Tumor
0.4
563
Tumor
0.4
557
Tumor
0.4
1031
Tumor
0.3
867
Tumor
0.3
813
Tumor
0.3
877
Tumor
0.3
741
Tumor
0.3
483
Tumor
0.3
383
Tumor
0.3
777
Tumor
0.3
517
Tumor
0.3
663
Tumor
0.3
1025
Tumor
0.3
413
Tumor
0.3
965
Tumor
0.3
385
Tumor
0.3
915
Tumor
0.3
951
Tumor
0.3
211
Tumor
0.3
285
Tumor
0.3
227
Tumor
0.3
953
Tumor
0.3
426
Normal
0.3
685
Tumor
0.3
823
Tumor
0.3
341
Tumor
0.3
343
Tumor
0.3
851
Tumor
0.3
471
Tumor
0.3
923
Tumor
0.3
257
Tumor
0.2
231
Tumor
0.2
553
Tumor
0.2
137
Tumor
0.2
125
Tumor
0.2
727
Tumor
0.2
527
Tumor
0.2
445
Tumor
0.2
881
Tumor
0.2
467
Tumor
0.2
361
Tumor
0.2
297
Tumor
0.2
755
Tumor
0.2
433
Tumor
0.2
365
Tumor
0.2
525
Tumor
0.2
873
Tumor
0.2
487
Tumor
0.2
357
Tumor
0.2
815
Tumor
0.2
353
Tumor
0.2
131
Tumor
0.2
428
Normal
0.1
697
Tumor
0.1
422
Normal
0.1
724
Normal
0.1
937
Tumor
0.1
461
Tumor
0.1
283
Tumor
0.1
917
Tumor
0.1
918
Normal
0.1
223
Tumor
0.1
277
Tumor
0.1
671
Tumor
0.1
571
Tumor
0.1
393
Tumor
0.1
463
Tumor
0.1
213
Tumor
0.1
261
Tumor
0.1
414
Normal
0.1
921
Tumor
0.1
713
Tumor
0.1
447
Tumor
0.1
271
Tumor
0.1
444
Normal
0.1
573
Tumor
0.1
135
Tumor
0.1
513
Tumor
0.1
424
Normal
0.0
1027
Tumor
0.0
538
Normal
0.0
221
Tumor
0.0
113
Tumor
0.0
922
Normal
0.0
311
Tumor
0.0
954
Normal
0.0
515
Tumor
0.0
187
Tumor
0.0
554
Normal
0.0
924
Normal
0.0
943
Tumor
0.0
141
Tumor
0.0
737
Tumor
0.0
421
Tumor
0.0
963
Tumor
0.0
913
Tumor
0.0
185
Tumor
0.0
534
Normal
0.0
817
Tumor
0.0
926
Normal
0.0
466
Normal
0.0
327
Tumor
0.0
714
Normal
0.0
666
Normal
0.0
478
Normal
0.0
738
Normal
0.0
664
Normal
0.0
814
Normal
-0.1
874
Normal
-0.1
572
Normal
-0.1
857
Tumor
-0.1
955
Tumor
-0.1
363
Tumor
-0.1
446
Normal
-0.1
484
Normal
-0.1
432
Normal
-0.1
878
Normal
-0.1
464
Normal
-0.1
344
Normal
-0.1
312
Normal
-0.1
546
Normal
-0.1
648
Normal
-0.1
492
Normal
-0.1
641
Tumor
-0.1
722
Normal
-0.1
686
Normal
-0.1
1015
Tumor
-0.1
528
Normal
-0.1
1045
Tumor
-0.1
268
Normal
-0.1
436
Normal
-0.1
627
Tumor
-0.1
498
Normal
-0.1
568
Normal
-0.1
191
Tumor
-0.1
744
Normal
-0.1
975
Tumor
-0.1
884
Normal
-0.1
286
Normal
-0.1
228
Normal
-0.1
1016
Normal
-0.1
217
Tumor
-0.1
455
Tumor
-0.1
284
Normal
-0.1
452
Normal
-0.1
628
Normal
-0.1
981
Tumor
-0.1
488
Normal
-0.1
1043
Tumor
-0.1
145
Tumor
-0.1
468
Normal
-0.1
938
Normal
-0.1
864
Normal
-0.1
721
Tumor
-0.1
328
Normal
-0.1
415
Tumor
-0.1
716
Normal
-0.1
672
Normal
-0.1
142
Normal
-0.1
147
Tumor
-0.1
172
Normal
-0.1
916
Normal
-0.1
224
Normal
-0.1
882
Normal
-0.1
866
Normal
-0.1
136
Normal
-0.2
1028
Normal
-0.2
564
Normal
-0.2
574
Normal
-0.2
746
Normal
-0.2
1022
Normal
-0.2
494
Normal
-0.2
212
Normal
-0.2
944
Normal
-0.2
662
Normal
-0.2
516
Normal
-0.2
196
Normal
-0.2
1014
Normal
-0.2
412
Normal
-0.2
456
Normal
-0.2
912
Normal
-0.2
1042
Normal
-0.2
434
Normal
-0.2
636
Normal
-0.2
984
Normal
-0.2
514
Normal
-0.2
742
Normal
-0.2
162
Normal
-0.2
232
Normal
-0.2
388
Normal
-0.2
391
Tumor
-0.2
558
Normal
-0.2
1032
Normal
-0.2
342
Normal
-0.2
618
Normal
-0.2
352
Normal
-0.2
778
Normal
-0.2
862
Normal
-0.2
146
Normal
-0.2
396
Normal
-0.2
112
Tumor
-0.2
186
Normal
-0.2
863
Tumor
-0.2
696
Normal
-0.2
258
Normal
-0.2
786
Normal
-0.2
982
Normal
-0.2
524
Normal
-0.2
956
Normal
-0.2
952
Normal
-0.2
138
Normal
-0.2
384
Normal
-0.3
127
Tumor
-0.3
394
Normal
-0.3
1046
Normal
-0.3
332
Normal
-0.3
262
Normal
-0.3
728
Normal
-0.3
368
Normal
-0.3
195
Tumor
-0.3
128
Normal
-0.3
188
Normal
-0.3
616
Normal
-0.3
298
Normal
-0.3
1026
Normal
-0.3
472
Normal
-0.3
526
Normal
-0.3
698
Normal
-0.3
968
Normal
-0.3
474
Normal
-0.3
868
Normal
-0.3
218
Normal
-0.3
114
Normal
-0.3
536
Normal
-0.3
914
Normal
-0.3
1044
Normal
-0.3
416
Normal
-0.3
756
Normal
-0.3
192
Normal
-0.3
362
Normal
-0.3
392
Normal
-0.3
966
Normal
-0.3
642
Normal
-0.3
132
Normal
-0.3
386
Normal
-0.3
518
Normal
-0.3
976
Normal
-0.3
723
Tumor
-0.3
278
Normal
-0.3
366
Normal
-0.4
148
Normal
-0.4
448
Normal
-0.4
111
Normal
-0.4
491
Tumor
-0.4
124
Normal
-0.4
978
Normal
-0.4
214
Normal
-0.4
617
Tumor
-0.4
222
Normal
-0.4
354
Normal
-0.4
364
Normal
-0.4
964
Normal
-0.4
462
Normal
-0.4
958
Normal
-0.4
272
Normal
-0.4
376
Normal
-0.4
126
Normal
-0.4
358
Normal
-0.4
482
Normal
-0.5
356
Normal
-0.5
314
Normal
-0.5
816
Normal
-0.5
745
Tumor
-0.6
858
Normal
-0.6
824
Normal
-0.6
818
Normal
-0.7
852
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
