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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GIGYF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GIGYF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
67.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
63.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
62.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
49.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
45.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
43.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
43.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
42.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
36.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
33.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
28.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.3
911
Tumor
1.0
957
Tumor
0.7
231
Tumor
0.7
445
Tumor
0.7
635
Tumor
0.6
125
Tumor
0.6
937
Tumor
0.6
977
Tumor
0.6
477
Tumor
0.6
715
Tumor
0.6
483
Tumor
0.6
926
Normal
0.5
533
Tumor
0.5
967
Tumor
0.5
257
Tumor
0.5
497
Tumor
0.5
1041
Tumor
0.5
743
Tumor
0.5
915
Tumor
0.4
785
Tumor
0.4
431
Tumor
0.4
913
Tumor
0.4
365
Tumor
0.4
493
Tumor
0.4
285
Tumor
0.4
983
Tumor
0.4
553
Tumor
0.4
443
Tumor
0.4
672
Normal
0.4
451
Tumor
0.4
951
Tumor
0.4
813
Tumor
0.3
383
Tumor
0.3
648
Normal
0.3
863
Tumor
0.3
171
Tumor
0.3
568
Normal
0.3
131
Tumor
0.3
666
Normal
0.3
538
Normal
0.3
823
Tumor
0.3
865
Tumor
0.3
953
Tumor
0.3
714
Normal
0.3
867
Tumor
0.3
954
Normal
0.3
481
Tumor
0.3
573
Tumor
0.3
527
Tumor
0.3
223
Tumor
0.2
554
Normal
0.2
135
Tumor
0.2
664
Normal
0.2
728
Normal
0.2
415
Tumor
0.2
955
Tumor
0.2
567
Tumor
0.2
298
Normal
0.2
147
Tumor
0.2
965
Tumor
0.2
491
Tumor
0.2
427
Tumor
0.2
327
Tumor
0.2
463
Tumor
0.2
558
Normal
0.2
546
Normal
0.2
545
Tumor
0.2
444
Normal
0.2
861
Tumor
0.2
917
Tumor
0.2
1044
Normal
0.2
435
Tumor
0.2
498
Normal
0.2
744
Normal
0.2
393
Tumor
0.2
471
Tumor
0.1
883
Tumor
0.1
943
Tumor
0.1
617
Tumor
0.1
342
Normal
0.1
696
Normal
0.1
873
Tumor
0.1
436
Normal
0.1
981
Tumor
0.1
662
Normal
0.1
716
Normal
0.1
944
Normal
0.1
524
Normal
0.1
921
Tumor
0.1
615
Tumor
0.1
446
Normal
0.1
517
Tumor
0.1
868
Normal
0.1
572
Normal
0.1
574
Normal
0.1
742
Normal
0.1
956
Normal
0.1
938
Normal
0.1
922
Normal
0.1
124
Normal
0.1
433
Tumor
0.1
343
Tumor
0.1
918
Normal
0.1
1043
Tumor
0.1
1046
Normal
0.1
858
Normal
0.1
351
Tumor
0.1
271
Tumor
0.1
211
Tumor
0.1
355
Tumor
0.1
881
Tumor
0.1
473
Tumor
0.1
465
Tumor
0.1
852
Normal
0.1
455
Tumor
0.1
737
Tumor
0.1
161
Tumor
0.1
975
Tumor
0.1
818
Normal
0.1
862
Normal
0.1
755
Tumor
0.1
557
Tumor
0.1
123
Tumor
0.0
537
Tumor
0.0
1022
Normal
0.0
857
Tumor
0.0
196
Normal
0.0
432
Normal
0.0
777
Tumor
0.0
224
Normal
0.0
1015
Tumor
0.0
221
Tumor
0.0
916
Normal
0.0
286
Normal
0.0
261
Tumor
0.0
1027
Tumor
0.0
523
Tumor
0.0
423
Tumor
0.0
964
Normal
0.0
1013
Tumor
0.0
141
Tumor
0.0
297
Tumor
0.0
851
Tumor
0.0
864
Normal
0.0
492
Normal
0.0
984
Normal
0.0
963
Tumor
0.0
738
Normal
0.0
187
Tumor
0.0
528
Normal
0.0
484
Normal
0.0
814
Normal
0.0
815
Tumor
0.0
966
Normal
0.0
514
Normal
0.0
952
Normal
0.0
1045
Tumor
0.0
866
Normal
0.0
332
Normal
0.0
958
Normal
0.0
313
Tumor
0.0
421
Tumor
0.0
278
Normal
0.0
284
Normal
0.0
741
Tumor
0.0
364
Normal
0.0
1014
Normal
0.0
283
Tumor
0.0
686
Normal
0.0
518
Normal
0.0
721
Tumor
0.0
534
Normal
0.0
636
Normal
0.0
564
Normal
0.0
525
Tumor
0.0
968
Normal
0.0
426
Normal
0.0
816
Normal
0.0
874
Normal
0.0
213
Tumor
0.0
214
Normal
0.0
727
Tumor
0.0
228
Normal
0.0
1025
Tumor
0.0
386
Normal
0.0
641
Tumor
0.0
186
Normal
0.0
392
Normal
0.0
563
Tumor
0.0
361
Tumor
-0.1
356
Normal
-0.1
388
Normal
-0.1
366
Normal
-0.1
478
Normal
-0.1
114
Normal
-0.1
535
Tumor
-0.1
824
Normal
-0.1
413
Tumor
-0.1
884
Normal
-0.1
277
Tumor
-0.1
982
Normal
-0.1
384
Normal
-0.1
416
Normal
-0.1
513
Tumor
-0.1
385
Tumor
-0.1
487
Tumor
-0.1
912
Normal
-0.1
723
Tumor
-0.1
113
Tumor
-0.1
786
Normal
-0.1
258
Normal
-0.1
924
Normal
-0.1
192
Normal
-0.1
328
Normal
-0.1
447
Tumor
-0.1
148
Normal
-0.1
882
Normal
-0.1
434
Normal
-0.1
1021
Tumor
-0.1
185
Tumor
-0.1
452
Normal
-0.1
628
Normal
-0.1
411
Tumor
-0.1
341
Tumor
-0.1
344
Normal
-0.1
375
Tumor
-0.1
745
Tumor
-0.1
363
Tumor
-0.1
222
Normal
-0.1
232
Normal
-0.1
923
Tumor
-0.1
272
Normal
-0.1
878
Normal
-0.1
494
Normal
-0.1
212
Normal
-0.1
1016
Normal
-0.1
695
Tumor
-0.1
976
Normal
-0.1
162
Normal
-0.1
267
Tumor
-0.1
126
Normal
-0.1
488
Normal
-0.1
461
Tumor
-0.1
396
Normal
-0.1
394
Normal
-0.1
536
Normal
-0.1
516
Normal
-0.1
778
Normal
-0.1
146
Normal
-0.1
262
Normal
-0.1
722
Normal
-0.1
424
Normal
-0.1
127
Tumor
-0.1
474
Normal
-0.1
746
Normal
-0.1
724
Normal
-0.2
468
Normal
-0.2
111
Normal
-0.2
1031
Tumor
-0.2
482
Normal
-0.2
368
Normal
-0.2
472
Normal
-0.2
387
Tumor
-0.2
877
Tumor
-0.2
268
Normal
-0.2
218
Normal
-0.2
354
Normal
-0.2
978
Normal
-0.2
456
Normal
-0.2
526
Normal
-0.2
647
Tumor
-0.2
661
Tumor
-0.2
312
Normal
-0.2
145
Tumor
-0.2
698
Normal
-0.2
112
Tumor
-0.2
1028
Normal
-0.2
642
Normal
-0.2
414
Normal
-0.2
362
Normal
-0.2
616
Normal
-0.2
627
Tumor
-0.2
376
Normal
-0.2
142
Normal
-0.2
467
Tumor
-0.2
412
Normal
-0.2
191
Tumor
-0.2
448
Normal
-0.2
914
Normal
-0.2
756
Normal
-0.2
1042
Normal
-0.2
138
Normal
-0.2
331
Tumor
-0.2
136
Normal
-0.2
422
Normal
-0.2
618
Normal
-0.3
128
Normal
-0.3
1026
Normal
-0.3
314
Normal
-0.3
1032
Normal
-0.3
697
Tumor
-0.3
217
Tumor
-0.3
352
Normal
-0.3
391
Tumor
-0.3
428
Normal
-0.3
462
Normal
-0.3
311
Tumor
-0.3
358
Normal
-0.3
137
Tumor
-0.3
188
Normal
-0.3
227
Tumor
-0.4
132
Normal
-0.4
466
Normal
-0.4
172
Normal
-0.4
925
Tumor
-0.4
395
Tumor
-0.4
357
Tumor
-0.4
464
Normal
-0.4
515
Tumor
-0.4
195
Tumor
-0.4
685
Tumor
-0.5
571
Tumor
-0.5
713
Tumor
-0.5
665
Tumor
-0.5
367
Tumor
-0.5
671
Tumor
-0.6
353
Tumor
-0.6
663
Tumor
-0.6
817
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
