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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGFBP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
458.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3578.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2716.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2683.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2630.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2515.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2506.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2184.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2000.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1901.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1862.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1856.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1785.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1764.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1757.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1749.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1695.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1682.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1678.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1649.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1610.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1603.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1588.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1546.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1521.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1454.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1433.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1400.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1352.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1327.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1295.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1256.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1247.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1235.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1200.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1189.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1156.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1145.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1122.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1121.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1113.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1093.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1072.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1067.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1053.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1045.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1034.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1030.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1029.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1024.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
978.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
959.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
943.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
935.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
932.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
929.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
918.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
914.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
911.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
903.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
895.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
890.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
875.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
865.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
865.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
859.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
852.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
847.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
845.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
844.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
832.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
826.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
820.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
816.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
804.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
800.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
796.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
772.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
767.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
757.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
748.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
742.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
731.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
729.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
728.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
726.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
713.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
708.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
697.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
679.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
674.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
673.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
632.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
627.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
626.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
622.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
610.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
607.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
593.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
584.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
579.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
561.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
556.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
537.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
533.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
520.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
511.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
510.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
508.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
499.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
496.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
493.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
491.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
487.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
484.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
483.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
477.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
467.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
467.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
460.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
460.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
450.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
444.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
444.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
443.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
426.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
418.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
410.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
402.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
401.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
401.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
398.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
397.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
388.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
385.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
383.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
381.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
379.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
379.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
370.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
368.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
366.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
363.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
359.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
358.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
356.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
355.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
352.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
349.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
346.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
345.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
339.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
334.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
330.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
328.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
328.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
326.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
323.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
311.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
310.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
300.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
300.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
294.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
292.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
290.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
290.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
287.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
286.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
286.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
285.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
275.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
273.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
270.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
268.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
266.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
264.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
264.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
260.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
259.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
259.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
258.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
257.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
256.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
255.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
254.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
253.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
252.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
245.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
243.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
241.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
241.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
238.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
238.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
235.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
231.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
230.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
227.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
224.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
222.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
217.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
217.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
216.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
209.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
207.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
203.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
200.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
197.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
196.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
196.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
193.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
191.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
190.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
187.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
183.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
183.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
179.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
175.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
173.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
170.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
169.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
163.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
162.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
162.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
161.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
154.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
150.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
149.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
147.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
146.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
139.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
138.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
137.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
137.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
134.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
133.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
132.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
129.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
128.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
128.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
128.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
126.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
126.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
122.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
122.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
122.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
122.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
121.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
120.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
116.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
113.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
111.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
109.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
109.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
109.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
109.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
104.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
103.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
101.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
101.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
100.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
98.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
98.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
97.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
92.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
89.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
88.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
86.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
86.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
85.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
83.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
81.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
81.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
79.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
76.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
76.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
75.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
74.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
73.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
71.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
69.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
67.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
67.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
66.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
66.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
64.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
64.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
64.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
62.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
61.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
61.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
60.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
60.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
59.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
58.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
57.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
57.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
56.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
56.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
55.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
54.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
53.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
53.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
52.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
49.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
47.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
47.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
46.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
45.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
44.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
40.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
38.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
33.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
33.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGFBP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
427.7
Number of samples
231
Samples
Sample
Description
TPM
DO45133
0 years, male, NA, stage:3, dead, 660 days
4924.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2459.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2346.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2325.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
1848.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
1814.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
1761.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
1723.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
1681.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1676.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1618.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
1548.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
1529.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
1465.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1421.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
1328.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
1306.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1291.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1290.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1275.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
1267.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1249.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1235.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1228.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
1203.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
1162.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
1139.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1138.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
1098.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1056.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
1001.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
930.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
882.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
875.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
870.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
861.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
861.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
855.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
835.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
831.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
824.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
774.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
760.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
752.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
726.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
719.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
718.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
713.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
696.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
683.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
683.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
673.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
664.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
625.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
625.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
620.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
620.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
602.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
591.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
529.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
528.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
523.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
520.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
518.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
501.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
489.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
488.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
486.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
455.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
448.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
446.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
432.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
430.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
422.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
415.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
412.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
409.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
392.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
391.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
379.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
376.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
373.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
371.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
358.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
348.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
344.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
336.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
335.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
328.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
311.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
310.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
306.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
304.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
298.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
291.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
291.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
285.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
282.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
282.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
278.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
273.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
272.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
267.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
261.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
256.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
255.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
244.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
243.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
237.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
236.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
234.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
233.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
231.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
227.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
227.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
225.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
213.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
211.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
199.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
197.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
197.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
195.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
189.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
188.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
182.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
178.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
173.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
168.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
157.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
146.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
142.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
141.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
140.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
136.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
134.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
134.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
133.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
128.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
127.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
126.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
124.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
121.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
117.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
117.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
114.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
111.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
111.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
109.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
99.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
96.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
94.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
93.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
93.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
92.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
91.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
91.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
90.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
89.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
89.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
88.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
86.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
84.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
84.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
79.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
79.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
76.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
74.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
71.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
68.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
68.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
67.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
65.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
65.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
64.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
64.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
63.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
61.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
61.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
61.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
61.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
59.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
57.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
53.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
52.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
52.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
52.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
51.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
50.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
50.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
46.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
44.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
39.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
36.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
815
Tumor
2.7
387
Tumor
2.5
535
Tumor
2.4
425
Tumor
2.2
851
Tumor
2.2
537
Tumor
2.0
665
Tumor
2.0
431
Tumor
1.8
573
Tumor
1.6
331
Tumor
1.6
685
Tumor
1.6
227
Tumor
1.5
981
Tumor
1.5
517
Tumor
1.4
523
Tumor
1.4
951
Tumor
1.3
487
Tumor
1.2
967
Tumor
1.1
867
Tumor
1.1
755
Tumor
1.0
957
Tumor
1.0
285
Tumor
1.0
363
Tumor
0.9
817
Tumor
0.9
1021
Tumor
0.8
944
Normal
0.8
257
Tumor
0.8
1027
Tumor
0.8
353
Tumor
0.8
953
Tumor
0.8
217
Tumor
0.8
878
Normal
0.7
1014
Normal
0.7
498
Normal
0.7
261
Tumor
0.7
1041
Tumor
0.7
488
Normal
0.7
383
Tumor
0.7
982
Normal
0.7
1031
Tumor
0.7
553
Tumor
0.7
125
Tumor
0.7
635
Tumor
0.7
567
Tumor
0.6
1025
Tumor
0.6
332
Normal
0.6
618
Normal
0.6
954
Normal
0.6
343
Tumor
0.5
1028
Normal
0.5
977
Tumor
0.5
1043
Tumor
0.5
124
Normal
0.5
536
Normal
0.5
385
Tumor
0.5
367
Tumor
0.4
915
Tumor
0.4
344
Normal
0.4
816
Normal
0.4
357
Tumor
0.4
128
Normal
0.4
127
Tumor
0.4
714
Normal
0.4
112
Tumor
0.3
861
Tumor
0.3
358
Normal
0.3
636
Normal
0.3
232
Normal
0.3
722
Normal
0.3
524
Normal
0.3
1044
Normal
0.3
883
Tumor
0.3
823
Tumor
0.3
527
Tumor
0.3
142
Normal
0.3
538
Normal
0.2
351
Tumor
0.2
918
Normal
0.2
865
Tumor
0.2
1022
Normal
0.2
393
Tumor
0.2
554
Normal
0.2
978
Normal
0.2
696
Normal
0.2
813
Tumor
0.2
172
Normal
0.2
742
Normal
0.2
864
Normal
0.2
914
Normal
0.2
852
Normal
0.2
785
Tumor
0.1
481
Tumor
0.1
432
Normal
0.1
341
Tumor
0.1
968
Normal
0.1
138
Normal
0.1
354
Normal
0.1
126
Normal
0.1
494
Normal
0.1
191
Tumor
0.1
557
Tumor
0.1
877
Tumor
0.1
394
Normal
0.1
958
Normal
0.1
427
Tumor
0.1
342
Normal
0.1
366
Normal
0.1
352
Normal
0.1
414
Normal
0.1
328
Normal
0.1
114
Normal
0.1
391
Tumor
0.1
135
Tumor
0.1
956
Normal
0.1
873
Tumor
0.1
445
Tumor
0.0
187
Tumor
0.0
286
Normal
0.0
743
Tumor
0.0
975
Tumor
0.0
721
Tumor
0.0
443
Tumor
0.0
424
Normal
0.0
716
Normal
0.0
697
Tumor
0.0
745
Tumor
0.0
218
Normal
0.0
647
Tumor
0.0
298
Normal
0.0
545
Tumor
-0.1
976
Normal
-0.1
313
Tumor
-0.1
526
Normal
-0.1
426
Normal
-0.1
744
Normal
-0.1
516
Normal
-0.1
824
Normal
-0.1
741
Tumor
-0.1
628
Normal
-0.1
146
Normal
-0.1
955
Tumor
-0.1
1032
Normal
-0.1
778
Normal
-0.2
415
Tumor
-0.2
447
Tumor
-0.2
984
Normal
-0.2
1013
Tumor
-0.2
858
Normal
-0.2
952
Normal
-0.2
672
Normal
-0.2
698
Normal
-0.2
814
Normal
-0.2
312
Normal
-0.2
964
Normal
-0.2
686
Normal
-0.2
1026
Normal
-0.2
392
Normal
-0.2
938
Normal
-0.2
866
Normal
-0.2
423
Tumor
-0.2
364
Normal
-0.3
428
Normal
-0.3
314
Normal
-0.3
446
Normal
-0.3
558
Normal
-0.3
923
Tumor
-0.3
666
Normal
-0.3
534
Normal
-0.3
474
Normal
-0.3
327
Tumor
-0.3
444
Normal
-0.3
214
Normal
-0.3
513
Tumor
-0.3
386
Normal
-0.3
966
Normal
-0.3
563
Tumor
-0.3
715
Tumor
-0.3
963
Tumor
-0.3
136
Normal
-0.3
546
Normal
-0.3
492
Normal
-0.4
434
Normal
-0.4
137
Tumor
-0.4
662
Normal
-0.4
728
Normal
-0.4
756
Normal
-0.4
435
Tumor
-0.4
376
Normal
-0.4
396
Normal
-0.4
1016
Normal
-0.4
185
Tumor
-0.4
161
Tumor
-0.4
356
Normal
-0.4
422
Normal
-0.5
983
Tumor
-0.5
355
Tumor
-0.5
617
Tumor
-0.5
388
Normal
-0.5
113
Tumor
-0.5
448
Normal
-0.5
111
Normal
-0.5
262
Normal
-0.5
926
Normal
-0.5
222
Normal
-0.5
456
Normal
-0.5
123
Tumor
-0.5
868
Normal
-0.5
882
Normal
-0.5
641
Tumor
-0.5
1046
Normal
-0.5
857
Tumor
-0.5
411
Tumor
-0.5
132
Normal
-0.5
284
Normal
-0.5
713
Tumor
-0.6
642
Normal
-0.6
145
Tumor
-0.6
311
Tumor
-0.6
911
Tumor
-0.6
483
Tumor
-0.6
518
Normal
-0.6
574
Normal
-0.6
965
Tumor
-0.6
213
Tumor
-0.6
384
Normal
-0.6
471
Tumor
-0.6
528
Normal
-0.7
221
Tumor
-0.7
1045
Tumor
-0.7
912
Normal
-0.7
818
Normal
-0.7
671
Tumor
-0.7
1042
Normal
-0.7
436
Normal
-0.7
484
Normal
-0.7
162
Normal
-0.7
368
Normal
-0.7
497
Tumor
-0.7
297
Tumor
-0.7
186
Normal
-0.8
493
Tumor
-0.8
462
Normal
-0.8
924
Normal
-0.8
1015
Tumor
-0.8
874
Normal
-0.8
362
Normal
-0.8
568
Normal
-0.8
661
Tumor
-0.8
514
Normal
-0.8
477
Tumor
-0.8
746
Normal
-0.8
141
Tumor
-0.8
224
Normal
-0.8
421
Tumor
-0.8
786
Normal
-0.8
922
Normal
-0.8
223
Tumor
-0.9
361
Tumor
-0.9
375
Tumor
-0.9
943
Tumor
-0.9
491
Tumor
-0.9
413
Tumor
-0.9
917
Tumor
-0.9
468
Normal
-0.9
723
Tumor
-0.9
724
Normal
-0.9
131
Tumor
-1.0
937
Tumor
-1.0
195
Tumor
-1.0
515
Tumor
-1.0
525
Tumor
-1.0
433
Tumor
-1.0
258
Normal
-1.0
171
Tumor
-1.0
571
Tumor
-1.0
451
Tumor
-1.0
663
Tumor
-1.0
862
Normal
-1.0
278
Normal
-1.0
564
Normal
-1.1
271
Tumor
-1.1
196
Normal
-1.1
478
Normal
-1.1
921
Tumor
-1.1
863
Tumor
-1.1
916
Normal
-1.2
664
Normal
-1.2
268
Normal
-1.2
627
Tumor
-1.2
464
Normal
-1.2
228
Normal
-1.2
472
Normal
-1.2
365
Tumor
-1.2
465
Tumor
-1.2
277
Tumor
-1.3
188
Normal
-1.3
738
Normal
-1.3
412
Normal
-1.3
148
Normal
-1.3
272
Normal
-1.3
416
Normal
-1.3
395
Tumor
-1.3
572
Normal
-1.3
881
Tumor
-1.3
884
Normal
-1.3
192
Normal
-1.3
283
Tumor
-1.3
533
Tumor
-1.4
616
Normal
-1.4
727
Tumor
-1.4
695
Tumor
-1.4
615
Tumor
-1.4
147
Tumor
-1.4
482
Normal
-1.4
913
Tumor
-1.5
648
Normal
-1.5
212
Normal
-1.5
231
Tumor
-1.5
473
Tumor
-1.5
452
Normal
-1.5
267
Tumor
-1.6
925
Tumor
-1.6
461
Tumor
-1.8
467
Tumor
-1.9
463
Tumor
-1.9
737
Tumor
-2.0
777
Tumor
-2.1
211
Tumor
-2.1
466
Normal
-2.2
455
Tumor
-2.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.