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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARMT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
58.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
52.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
47.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
35.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
1.0
123
Tumor
0.9
147
Tumor
0.8
911
Tumor
0.8
663
Tumor
0.7
861
Tumor
0.7
451
Tumor
0.7
867
Tumor
0.6
353
Tumor
0.6
271
Tumor
0.5
125
Tumor
0.5
977
Tumor
0.5
128
Normal
0.5
981
Tumor
0.4
915
Tumor
0.4
515
Tumor
0.4
436
Normal
0.4
1043
Tumor
0.4
647
Tumor
0.4
231
Tumor
0.4
111
Normal
0.4
261
Tumor
0.4
425
Tumor
0.3
114
Normal
0.3
432
Normal
0.3
537
Tumor
0.3
1026
Normal
0.3
196
Normal
0.3
313
Tumor
0.3
366
Normal
0.3
298
Normal
0.3
443
Tumor
0.3
477
Tumor
0.3
715
Tumor
0.3
141
Tumor
0.3
431
Tumor
0.3
376
Normal
0.3
113
Tumor
0.3
445
Tumor
0.3
553
Tumor
0.3
698
Normal
0.3
272
Normal
0.3
546
Normal
0.2
341
Tumor
0.2
277
Tumor
0.2
571
Tumor
0.2
342
Normal
0.2
132
Normal
0.2
222
Normal
0.2
465
Tumor
0.2
448
Normal
0.2
742
Normal
0.2
724
Normal
0.2
162
Normal
0.2
1015
Tumor
0.2
756
Normal
0.2
1022
Normal
0.2
227
Tumor
0.2
696
Normal
0.2
426
Normal
0.2
463
Tumor
0.2
126
Normal
0.2
728
Normal
0.2
618
Normal
0.2
138
Normal
0.2
914
Normal
0.2
354
Normal
0.2
358
Normal
0.2
214
Normal
0.2
148
Normal
0.2
262
Normal
0.2
136
Normal
0.2
1021
Tumor
0.2
777
Tumor
0.2
518
Normal
0.2
858
Normal
0.2
428
Normal
0.2
738
Normal
0.2
568
Normal
0.2
1042
Normal
0.2
466
Normal
0.2
137
Tumor
0.2
482
Normal
0.2
327
Tumor
0.2
424
Normal
0.1
746
Normal
0.1
285
Tumor
0.1
786
Normal
0.1
112
Tumor
0.1
462
Normal
0.1
172
Normal
0.1
944
Normal
0.1
221
Tumor
0.1
422
Normal
0.1
723
Tumor
0.1
1046
Normal
0.1
616
Normal
0.1
356
Normal
0.1
186
Normal
0.1
564
Normal
0.1
745
Tumor
0.1
628
Normal
0.1
642
Normal
0.1
487
Tumor
0.1
864
Normal
0.1
142
Normal
0.1
648
Normal
0.1
312
Normal
0.1
862
Normal
0.1
484
Normal
0.1
636
Normal
0.1
516
Normal
0.1
278
Normal
0.1
727
Tumor
0.1
534
Normal
0.1
414
Normal
0.1
472
Normal
0.1
1014
Normal
0.1
228
Normal
0.1
952
Normal
0.1
714
Normal
0.1
232
Normal
0.1
866
Normal
0.1
344
Normal
0.1
146
Normal
0.1
737
Tumor
0.1
367
Tumor
0.1
824
Normal
0.1
924
Normal
0.1
446
Normal
0.1
435
Tumor
0.1
258
Normal
0.1
722
Normal
0.1
416
Normal
0.1
923
Tumor
0.1
662
Normal
0.0
955
Tumor
0.0
456
Normal
0.0
528
Normal
0.0
563
Tumor
0.0
124
Normal
0.0
755
Tumor
0.0
131
Tumor
0.0
666
Normal
0.0
188
Normal
0.0
865
Tumor
0.0
912
Normal
0.0
617
Tumor
0.0
392
Normal
0.0
286
Normal
0.0
423
Tumor
0.0
328
Normal
0.0
527
Tumor
0.0
386
Normal
0.0
474
Normal
0.0
1016
Normal
0.0
964
Normal
0.0
878
Normal
0.0
664
Normal
0.0
412
Normal
0.0
394
Normal
0.0
212
Normal
0.0
665
Tumor
0.0
127
Tumor
0.0
283
Tumor
0.0
818
Normal
0.0
982
Normal
0.0
364
Normal
0.0
526
Normal
0.0
554
Normal
0.0
1028
Normal
0.0
744
Normal
0.0
778
Normal
0.0
268
Normal
0.0
473
Tumor
0.0
464
Normal
0.0
956
Normal
0.0
1032
Normal
0.0
938
Normal
0.0
954
Normal
0.0
368
Normal
0.0
218
Normal
0.0
1044
Normal
0.0
1045
Tumor
0.0
882
Normal
0.0
523
Tumor
0.0
488
Normal
0.0
926
Normal
-0.1
363
Tumor
-0.1
1027
Tumor
-0.1
452
Normal
-0.1
468
Normal
-0.1
434
Normal
-0.1
716
Normal
-0.1
695
Tumor
-0.1
284
Normal
-0.1
868
Normal
-0.1
874
Normal
-0.1
785
Tumor
-0.1
943
Tumor
-0.1
357
Tumor
-0.1
816
Normal
-0.1
388
Normal
-0.1
533
Tumor
-0.1
918
Normal
-0.1
884
Normal
-0.1
1031
Tumor
-0.1
514
Normal
-0.1
978
Normal
-0.1
966
Normal
-0.1
332
Normal
-0.1
627
Tumor
-0.1
1013
Tumor
-0.1
187
Tumor
-0.1
455
Tumor
-0.1
984
Normal
-0.1
314
Normal
-0.1
396
Normal
-0.1
743
Tumor
-0.1
411
Tumor
-0.1
572
Normal
-0.1
267
Tumor
-0.1
365
Tumor
-0.1
461
Tumor
-0.1
697
Tumor
-0.1
185
Tumor
-0.1
976
Normal
-0.1
967
Tumor
-0.1
384
Normal
-0.2
352
Normal
-0.2
362
Normal
-0.2
713
Tumor
-0.2
641
Tumor
-0.2
968
Normal
-0.2
421
Tumor
-0.2
483
Tumor
-0.2
813
Tumor
-0.2
145
Tumor
-0.2
558
Normal
-0.2
494
Normal
-0.2
686
Normal
-0.2
444
Normal
-0.2
958
Normal
-0.2
574
Normal
-0.2
171
Tumor
-0.2
661
Tumor
-0.2
257
Tumor
-0.2
975
Tumor
-0.2
921
Tumor
-0.2
873
Tumor
-0.2
922
Normal
-0.2
311
Tumor
-0.2
852
Normal
-0.2
963
Tumor
-0.2
433
Tumor
-0.2
192
Normal
-0.2
383
Tumor
-0.2
525
Tumor
-0.2
478
Normal
-0.2
195
Tumor
-0.2
953
Tumor
-0.2
497
Tumor
-0.3
937
Tumor
-0.3
965
Tumor
-0.3
983
Tumor
-0.3
916
Normal
-0.3
471
Tumor
-0.3
863
Tumor
-0.3
361
Tumor
-0.3
191
Tumor
-0.3
387
Tumor
-0.3
567
Tumor
-0.3
672
Normal
-0.3
815
Tumor
-0.3
415
Tumor
-0.3
391
Tumor
-0.3
413
Tumor
-0.3
447
Tumor
-0.3
881
Tumor
-0.3
817
Tumor
-0.3
685
Tumor
-0.3
721
Tumor
-0.3
538
Normal
-0.3
951
Tumor
-0.4
635
Tumor
-0.4
851
Tumor
-0.4
517
Tumor
-0.4
492
Normal
-0.4
393
Tumor
-0.4
913
Tumor
-0.4
224
Normal
-0.4
557
Tumor
-0.4
883
Tumor
-0.4
524
Normal
-0.4
491
Tumor
-0.4
217
Tumor
-0.4
814
Normal
-0.4
481
Tumor
-0.4
331
Tumor
-0.4
375
Tumor
-0.4
957
Tumor
-0.5
498
Normal
-0.5
297
Tumor
-0.5
395
Tumor
-0.5
343
Tumor
-0.5
877
Tumor
-0.5
513
Tumor
-0.5
223
Tumor
-0.5
355
Tumor
-0.5
1041
Tumor
-0.5
536
Normal
-0.5
213
Tumor
-0.5
427
Tumor
-0.5
467
Tumor
-0.5
857
Tumor
-0.5
925
Tumor
-0.6
823
Tumor
-0.6
351
Tumor
-0.6
615
Tumor
-0.6
493
Tumor
-0.6
161
Tumor
-0.6
135
Tumor
-0.7
535
Tumor
-0.7
211
Tumor
-0.7
573
Tumor
-0.7
385
Tumor
-0.7
671
Tumor
-0.8
1025
Tumor
-0.8
545
Tumor
-0.9
917
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
