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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFKBIE is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
91.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
74.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
72.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
54.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
53.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
52.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
48.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
44.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
41.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
39.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
38.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
38.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
37.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
36.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
34.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
32.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
31.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
31.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
28.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
24.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
19.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFKBIE is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
81.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
38.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
1.9
881
Tumor
1.8
136
Normal
1.1
883
Tumor
1.1
661
Tumor
1.1
343
Tumor
0.9
743
Tumor
0.9
141
Tumor
0.8
814
Normal
0.8
737
Tumor
0.8
975
Tumor
0.7
1025
Tumor
0.7
1031
Tumor
0.7
823
Tumor
0.7
665
Tumor
0.7
863
Tumor
0.6
663
Tumor
0.6
211
Tumor
0.6
375
Tumor
0.6
142
Normal
0.6
671
Tumor
0.6
477
Tumor
0.6
857
Tumor
0.6
285
Tumor
0.5
672
Normal
0.5
473
Tumor
0.5
351
Tumor
0.5
471
Tumor
0.5
137
Tumor
0.5
146
Normal
0.5
1021
Tumor
0.5
455
Tumor
0.5
341
Tumor
0.5
727
Tumor
0.4
884
Normal
0.4
641
Tumor
0.4
815
Tumor
0.4
413
Tumor
0.4
976
Normal
0.4
425
Tumor
0.4
926
Normal
0.4
443
Tumor
0.4
131
Tumor
0.4
387
Tumor
0.4
724
Normal
0.4
878
Normal
0.4
125
Tumor
0.4
112
Tumor
0.4
434
Normal
0.3
666
Normal
0.3
365
Tumor
0.3
367
Tumor
0.3
297
Tumor
0.3
384
Normal
0.3
185
Tumor
0.3
1028
Normal
0.3
882
Normal
0.3
161
Tumor
0.3
147
Tumor
0.3
138
Normal
0.3
662
Normal
0.3
123
Tumor
0.3
362
Normal
0.3
124
Normal
0.3
817
Tumor
0.3
271
Tumor
0.3
128
Normal
0.3
145
Tumor
0.3
262
Normal
0.3
126
Normal
0.3
272
Normal
0.3
627
Tumor
0.3
968
Normal
0.3
461
Tumor
0.3
283
Tumor
0.2
132
Normal
0.2
187
Tumor
0.2
1027
Tumor
0.2
943
Tumor
0.2
913
Tumor
0.2
188
Normal
0.2
311
Tumor
0.2
261
Tumor
0.2
958
Normal
0.2
114
Normal
0.2
411
Tumor
0.2
517
Tumor
0.2
111
Normal
0.2
312
Normal
0.2
924
Normal
0.2
912
Normal
0.2
332
Normal
0.2
963
Tumor
0.2
851
Tumor
0.2
127
Tumor
0.2
728
Normal
0.2
852
Normal
0.2
223
Tumor
0.2
472
Normal
0.1
331
Tumor
0.1
462
Normal
0.1
635
Tumor
0.1
383
Tumor
0.1
1042
Normal
0.1
268
Normal
0.1
513
Tumor
0.1
478
Normal
0.1
664
Normal
0.1
313
Tumor
0.1
1026
Normal
0.1
916
Normal
0.1
964
Normal
0.1
617
Tumor
0.1
467
Tumor
0.1
914
Normal
0.1
277
Tumor
0.1
493
Tumor
0.1
868
Normal
0.1
314
Normal
0.1
1041
Tumor
0.1
231
Tumor
0.1
428
Normal
0.1
813
Tumor
0.1
113
Tumor
0.1
482
Normal
0.1
148
Normal
0.1
538
Normal
0.1
386
Normal
0.1
824
Normal
0.1
818
Normal
0.0
647
Tumor
0.0
481
Tumor
0.0
953
Tumor
0.0
224
Normal
0.0
497
Tumor
0.0
553
Tumor
0.0
873
Tumor
0.0
368
Normal
0.0
361
Tumor
0.0
267
Tumor
0.0
232
Normal
0.0
427
Tumor
0.0
816
Normal
0.0
376
Normal
0.0
545
Tumor
0.0
474
Normal
0.0
956
Normal
0.0
444
Normal
0.0
525
Tumor
0.0
744
Normal
0.0
1032
Normal
0.0
414
Normal
0.0
951
Tumor
0.0
388
Normal
0.0
162
Normal
0.0
298
Normal
0.0
366
Normal
0.0
394
Normal
0.0
981
Tumor
-0.1
422
Normal
-0.1
391
Tumor
-0.1
1016
Normal
-0.1
421
Tumor
-0.1
492
Normal
-0.1
498
Normal
-0.1
278
Normal
-0.1
171
Tumor
-0.1
915
Tumor
-0.1
435
Tumor
-0.1
392
Normal
-0.1
135
Tumor
-0.1
395
Tumor
-0.1
186
Normal
-0.1
258
Normal
-0.1
396
Normal
-0.1
385
Tumor
-0.1
463
Tumor
-0.1
257
Tumor
-0.1
445
Tumor
-0.1
778
Normal
-0.1
786
Normal
-0.1
228
Normal
-0.1
534
Normal
-0.1
432
Normal
-0.1
723
Tumor
-0.1
755
Tumor
-0.1
618
Normal
-0.1
483
Tumor
-0.1
741
Tumor
-0.1
364
Normal
-0.2
937
Tumor
-0.2
861
Tumor
-0.2
172
Normal
-0.2
433
Tumor
-0.2
212
Normal
-0.2
284
Normal
-0.2
423
Tumor
-0.2
357
Tumor
-0.2
1022
Normal
-0.2
738
Normal
-0.2
352
Normal
-0.2
546
Normal
-0.2
966
Normal
-0.2
527
Tumor
-0.2
426
Normal
-0.2
358
Normal
-0.2
982
Normal
-0.2
865
Tumor
-0.2
722
Normal
-0.2
491
Tumor
-0.2
858
Normal
-0.2
874
Normal
-0.2
354
Normal
-0.2
713
Tumor
-0.2
867
Tumor
-0.2
917
Tumor
-0.2
952
Normal
-0.2
528
Normal
-0.2
533
Tumor
-0.2
446
Normal
-0.2
695
Tumor
-0.2
451
Tumor
-0.2
648
Normal
-0.2
777
Tumor
-0.2
515
Tumor
-0.2
424
Normal
-0.2
356
Normal
-0.2
286
Normal
-0.3
866
Normal
-0.3
922
Normal
-0.3
464
Normal
-0.3
554
Normal
-0.3
864
Normal
-0.3
436
Normal
-0.3
715
Tumor
-0.3
628
Normal
-0.3
745
Tumor
-0.3
862
Normal
-0.3
431
Tumor
-0.3
742
Normal
-0.3
328
Normal
-0.3
785
Tumor
-0.3
636
Normal
-0.3
756
Normal
-0.3
642
Normal
-0.3
746
Normal
-0.3
488
Normal
-0.3
925
Tumor
-0.3
344
Normal
-0.3
494
Normal
-0.4
416
Normal
-0.4
537
Tumor
-0.4
955
Tumor
-0.4
954
Normal
-0.4
1015
Tumor
-0.4
227
Tumor
-0.4
393
Tumor
-0.4
923
Tumor
-0.4
938
Normal
-0.4
452
Normal
-0.4
412
Normal
-0.4
685
Tumor
-0.4
977
Tumor
-0.5
456
Normal
-0.5
465
Tumor
-0.5
487
Tumor
-0.5
327
Tumor
-0.5
523
Tumor
-0.5
524
Normal
-0.5
1014
Normal
-0.5
984
Normal
-0.5
616
Normal
-0.5
714
Normal
-0.5
355
Tumor
-0.5
514
Normal
-0.5
983
Tumor
-0.6
716
Normal
-0.6
721
Tumor
-0.6
918
Normal
-0.6
615
Tumor
-0.6
363
Tumor
-0.6
696
Normal
-0.6
342
Normal
-0.6
484
Normal
-0.6
466
Normal
-0.6
415
Tumor
-0.7
468
Normal
-0.7
686
Normal
-0.7
1013
Tumor
-0.7
944
Normal
-0.8
526
Normal
-0.8
516
Normal
-0.8
978
Normal
-0.8
921
Tumor
-0.9
353
Tumor
-0.9
518
Normal
-0.9
967
Tumor
-1.1
911
Tumor
-1.2
965
Tumor
-1.5
957
Tumor
-1.5
1044
Normal
N/A
1043
Tumor
N/A
1046
Normal
N/A
1045
Tumor
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
448
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
213
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
