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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MLIP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
119.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
110.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
109.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
84.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
82.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
78.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
77.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
76.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
76.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
75.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
73.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
73.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
72.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
71.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
70.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
66.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
58.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
48.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
47.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
46.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
45.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
43.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
41.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
40.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
37.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
28.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MLIP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
136.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
80.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
68.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
54.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
53.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
49.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
40.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
39.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
36.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
25.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
2.1
785
Tumor
1.9
952
Normal
1.7
863
Tumor
1.4
393
Tumor
1.3
627
Tumor
1.3
327
Tumor
1.2
518
Normal
1.2
786
Normal
1.2
648
Normal
1.2
698
Normal
1.2
937
Tumor
1.2
977
Tumor
1.2
615
Tumor
1.2
745
Tumor
1.1
915
Tumor
1.1
1041
Tumor
1.1
851
Tumor
1.1
1046
Normal
1.1
911
Tumor
1.1
665
Tumor
1.1
487
Tumor
1.1
261
Tumor
1.1
874
Normal
1.1
695
Tumor
1.0
664
Normal
1.0
884
Normal
1.0
1042
Normal
1.0
714
Normal
1.0
1044
Normal
1.0
497
Tumor
0.9
1025
Tumor
0.9
913
Tumor
0.9
187
Tumor
0.9
635
Tumor
0.9
724
Normal
0.9
868
Normal
0.9
443
Tumor
0.9
564
Normal
0.8
746
Normal
0.8
616
Normal
0.8
618
Normal
0.8
353
Tumor
0.8
662
Normal
0.8
546
Normal
0.8
663
Tumor
0.8
132
Normal
0.8
474
Normal
0.8
964
Normal
0.8
742
Normal
0.8
755
Tumor
0.8
628
Normal
0.8
1032
Normal
0.7
867
Tumor
0.7
756
Normal
0.7
534
Normal
0.7
958
Normal
0.7
444
Normal
0.7
111
Normal
0.7
916
Normal
0.7
553
Tumor
0.7
568
Normal
0.6
574
Normal
0.6
362
Normal
0.6
171
Tumor
0.6
123
Tumor
0.6
924
Normal
0.6
1016
Normal
0.6
481
Tumor
0.6
954
Normal
0.6
466
Normal
0.6
456
Normal
0.6
1026
Normal
0.5
864
Normal
0.5
416
Normal
0.5
865
Tumor
0.5
978
Normal
0.5
716
Normal
0.5
223
Tumor
0.5
866
Normal
0.5
432
Normal
0.5
114
Normal
0.5
136
Normal
0.5
921
Tumor
0.5
815
Tumor
0.4
852
Normal
0.4
286
Normal
0.4
873
Tumor
0.4
426
Normal
0.4
358
Normal
0.4
473
Tumor
0.4
882
Normal
0.4
976
Normal
0.4
267
Tumor
0.4
494
Normal
0.4
696
Normal
0.4
412
Normal
0.4
433
Tumor
0.4
963
Tumor
0.4
472
Normal
0.4
424
Normal
0.4
422
Normal
0.4
538
Normal
0.3
492
Normal
0.3
468
Normal
0.3
666
Normal
0.3
563
Tumor
0.3
1045
Tumor
0.3
572
Normal
0.3
232
Normal
0.3
1015
Tumor
0.3
778
Normal
0.3
515
Tumor
0.3
715
Tumor
0.3
925
Tumor
0.3
858
Normal
0.3
728
Normal
0.3
533
Tumor
0.3
147
Tumor
0.3
517
Tumor
0.3
427
Tumor
0.3
464
Normal
0.2
641
Tumor
0.2
283
Tumor
0.2
526
Normal
0.2
141
Tumor
0.2
686
Normal
0.2
368
Normal
0.2
647
Tumor
0.2
195
Tumor
0.2
394
Normal
0.2
617
Tumor
0.2
923
Tumor
0.2
212
Normal
0.2
262
Normal
0.2
878
Normal
0.2
498
Normal
0.2
744
Normal
0.2
396
Normal
0.2
196
Normal
0.2
221
Tumor
0.2
523
Tumor
0.1
172
Normal
0.1
965
Tumor
0.1
914
Normal
0.1
272
Normal
0.1
148
Normal
0.1
493
Tumor
0.1
642
Normal
0.1
376
Normal
0.1
271
Tumor
0.1
341
Tumor
0.1
231
Tumor
0.1
912
Normal
0.1
415
Tumor
0.1
636
Normal
0.1
328
Normal
0.1
388
Normal
0.1
883
Tumor
0.1
113
Tumor
0.1
364
Normal
0.1
685
Tumor
0.1
455
Tumor
0.0
188
Normal
0.0
161
Tumor
0.0
877
Tumor
0.0
162
Normal
0.0
672
Normal
0.0
434
Normal
0.0
1013
Tumor
0.0
861
Tumor
0.0
478
Normal
0.0
146
Normal
0.0
352
Normal
0.0
217
Tumor
-0.1
862
Normal
-0.1
218
Normal
-0.1
723
Tumor
-0.1
516
Normal
-0.1
428
Normal
-0.1
431
Tumor
-0.1
1014
Normal
-0.1
471
Tumor
-0.1
191
Tumor
-0.1
126
Normal
-0.1
951
Tumor
-0.1
446
Normal
-0.1
363
Tumor
-0.1
344
Normal
-0.1
983
Tumor
-0.1
227
Tumor
-0.1
477
Tumor
-0.1
571
Tumor
-0.1
258
Normal
-0.2
741
Tumor
-0.2
968
Normal
-0.2
671
Tumor
-0.2
528
Normal
-0.2
558
Normal
-0.2
448
Normal
-0.2
414
Normal
-0.2
186
Normal
-0.2
435
Tumor
-0.2
488
Normal
-0.2
268
Normal
-0.2
355
Tumor
-0.2
1021
Tumor
-0.2
392
Normal
-0.2
557
Tumor
-0.2
984
Normal
-0.2
567
Tumor
-0.2
357
Tumor
-0.2
214
Normal
-0.2
436
Normal
-0.2
536
Normal
-0.3
421
Tumor
-0.3
425
Tumor
-0.3
554
Normal
-0.3
462
Normal
-0.3
537
Tumor
-0.3
284
Normal
-0.3
491
Tumor
-0.3
124
Normal
-0.3
185
Tumor
-0.3
722
Normal
-0.4
285
Tumor
-0.4
354
Normal
-0.4
467
Tumor
-0.4
142
Normal
-0.4
387
Tumor
-0.4
445
Tumor
-0.4
527
Tumor
-0.4
881
Tumor
-0.4
727
Tumor
-0.4
461
Tumor
-0.4
1031
Tumor
-0.4
816
Normal
-0.4
463
Tumor
-0.4
391
Tumor
-0.4
411
Tumor
-0.5
982
Normal
-0.5
257
Tumor
-0.5
1043
Tumor
-0.5
482
Normal
-0.5
955
Tumor
-0.5
386
Normal
-0.5
573
Tumor
-0.5
356
Normal
-0.5
137
Tumor
-0.5
222
Normal
-0.5
361
Tumor
-0.5
112
Tumor
-0.5
395
Tumor
-0.5
514
Normal
-0.5
944
Normal
-0.5
413
Tumor
-0.5
365
Tumor
-0.5
823
Tumor
-0.5
824
Normal
-0.6
383
Tumor
-0.6
738
Normal
-0.6
926
Normal
-0.6
447
Tumor
-0.6
125
Tumor
-0.6
981
Tumor
-0.6
145
Tumor
-0.6
975
Tumor
-0.6
224
Normal
-0.6
423
Tumor
-0.6
922
Normal
-0.6
342
Normal
-0.6
452
Normal
-0.6
818
Normal
-0.6
918
Normal
-0.6
721
Tumor
-0.6
857
Tumor
-0.6
135
Tumor
-0.7
697
Tumor
-0.7
128
Normal
-0.7
451
Tumor
-0.7
713
Tumor
-0.7
192
Normal
-0.7
228
Normal
-0.7
743
Tumor
-0.7
814
Normal
-0.8
967
Tumor
-0.8
138
Normal
-0.8
813
Tumor
-0.8
737
Tumor
-0.8
127
Tumor
-0.8
525
Tumor
-0.9
524
Normal
-0.9
545
Tumor
-0.9
938
Normal
-0.9
1028
Normal
-0.9
351
Tumor
-0.9
484
Normal
-1.0
375
Tumor
-1.0
366
Normal
-1.0
213
Tumor
-1.0
956
Normal
-1.0
131
Tumor
-1.0
817
Tumor
-1.0
384
Normal
-1.1
957
Tumor
-1.1
367
Tumor
-1.1
1022
Normal
-1.1
966
Normal
-1.1
513
Tumor
-1.1
535
Tumor
-1.1
211
Tumor
-1.1
483
Tumor
-1.2
385
Tumor
-1.2
661
Tumor
-1.3
343
Tumor
-1.4
465
Tumor
-1.5
917
Tumor
-1.5
953
Tumor
-1.5
943
Tumor
-1.7
1027
Tumor
-1.9
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
