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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
283.6
nTPM
FANTOM5:
263.2
Scaled Tags Per Million
Pig:
121.6
nTPM
Allen mouse:
7.3
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
283.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 253.5
2090
Male, age 80, both hemispheres
307.4
2301
Female, age 85, both hemispheres
289.6
2188
Female, age 91, both hemispheres
263.8
1984
Male, age 76, both hemispheres
153.3
Dorsal cochlear nucleus nTPM: 283.6
2378
Male, age 80, both hemispheres
351.2
2802
Male, age 74, right hemisphere
326.7
2058
Male, age 76, both hemispheres
271.2
2370
Male, age 61, both hemispheres
236.0
2187
Female, age 91, both hemispheres
232.9
Dorsal tegmental nucleus nTPM: 222.3
2083
Male, age 80, both hemispheres
263.7
2326
Male, age 74, both hemispheres
256.9
1936
Male, age 76, left hemisphere
251.7
2358
Male, age 61, both hemispheres
116.6
Dorsolateral tegmental area nTPM: 205.1
2654
Male, age 80, both hemispheres
270.9
2751
Female, age 85, both hemispheres
243.9
2360
Male, age 74, both hemispheres
188.3
2141
Male, age 76, both hemispheres
179.2
2337
Male, age 61, both hemispheres
143.3
Kolliker-Fuse nucleus nTPM: 247.3
2315
Male, age 76, right hemisphere
268.0
2793
Female, age 91, left hemisphere
261.0
2163
Male, age 80, both hemispheres
212.8
Lateral lemniscal nuclei nTPM: 178.7
2320
Female, age 91, left hemisphere
219.6
2169
Male, age 76, both hemispheres
188.4
2746
Female, age 85, left hemisphere
176.6
2036
Male, age 80, both hemispheres
159.5
2453
Male, age 74, right hemisphere
149.5
Lateral parabrachial nucleus nTPM: 244.1
2792
Male, age 76, both hemispheres
336.7
2013
Male, age 80, both hemispheres
268.5
2139
Female, age 85, right hemisphere
233.0
2790
Male, age 61, both hemispheres
138.1
Lateral vestibular nucleus nTPM: 271.3
2311
Male, age 80, both hemispheres
292.1
2184
Male, age 76, both hemispheres
250.6
Locus coeruleus nTPM: 163.3
2162
Male, age 80, both hemispheres
187.6
2720
Male, age 74, both hemispheres
182.2
2317
Female, age 72, unknown
174.0
2788
Male, age 74, unknown
162.4
2123
Female, age 91, both hemispheres
149.0
1980
Male, age 76, both hemispheres
146.7
2014
Male, age 55, unknown
141.5
Medial parabrachial nucleus nTPM: 214.4
2786
Male, age 76, both hemispheres
258.9
2463
Female, age 85, right hemisphere
224.9
2170
Female, age 91, both hemispheres
220.3
2854
Male, age 80, both hemispheres
203.1
2156
Male, age 61, both hemispheres
164.6
Medial periolivary nuclei nTPM: 189.3
2081
Male, age 80, both hemispheres
214.5
2458
Female, age 91, both hemispheres
207.8
2063
Male, age 76, both hemispheres
204.5
2791
Male, age 74, right hemisphere
185.4
2171
Female, age 85, both hemispheres
134.2
Motor facial nucleus nTPM: 212.5
2126
Male, age 61, both hemispheres
261.1
2697
Female, age 85, both hemispheres
233.3
2795
Female, age 91, both hemispheres
232.6
2062
Male, age 76, both hemispheres
195.7
2327
Male, age 80, both hemispheres
180.1
2365
Male, age 74, right hemisphere
172.2
Motor trigeminal nucleus nTPM: 214.7
2309
Male, age 76, both hemispheres
288.2
2321
Female, age 91, both hemispheres
225.4
2335
Male, age 61, both hemispheres
203.0
2560
Male, age 74, both hemispheres
185.8
2079
Male, age 80, both hemispheres
171.3
Nuclei of the trapezoid body nTPM: 196.1
2166
Male, age 80, both hemispheres
246.3
2368
Female, age 91, both hemispheres
212.2
2159
Male, age 61, both hemispheres
200.7
1983
Male, age 76, both hemispheres
195.2
2735
Female, age 85, both hemispheres
126.1
Nucleus raphe magnus nTPM: 166.3
2328
Male, age 80, both hemispheres
222.3
2051
Male, age 76, both hemispheres
204.4
2459
Female, age 91, both hemispheres
191.2
2455
Male, age 74, both hemispheres
158.3
2160
Male, age 61, both hemispheres
125.5
2172
Female, age 85, both hemispheres
96.2
Paramedian reticular nucleus nTPM: 209.7
2057
Male, age 80, both hemispheres
246.6
2052
Male, age 76, both hemispheres
216.3
2313
Male, age 61, both hemispheres
206.8
2050
Female, age 85, both hemispheres
169.1
Pedunculopontine tegmental nucleus nTPM: 192.9
2334
Male, age 80, both hemispheres
228.2
1921
Female, age 85, both hemispheres
206.6
2338
Male, age 61, both hemispheres
143.9
Pontine nuclei nTPM: 188.0
2319
Female, age 91, both hemispheres
242.5
2115
Male, age 80, left hemisphere
223.6
1968
Male, age 76, left hemisphere
223.2
2109
Female, age 72, unknown
199.9
1863
Male, age 55, unknown
195.1
2454
Male, age 74, left hemisphere
176.9
2787
Female, age 85, both hemispheres
127.7
2727
Male, age 61, right hemisphere
115.2
Pontine raphe nucleus nTPM: 188.8
2853
Male, age 76, midline
216.0
2122
Female, age 85, midline
161.7
Posteroventral cochlear nucleus nTPM: 274.8
2135
Female, age 91, both hemispheres
312.8
2341
Male, age 80, both hemispheres
310.3
2371
Male, age 61, both hemispheres
295.7
2070
Male, age 76, both hemispheres
245.6
2752
Female, age 85, both hemispheres
209.6
Principal sensory trigeminal nucleus nTPM: 197.1
2324
Male, age 76, both hemispheres
266.0
2367
Female, age 91, left hemisphere
211.0
2158
Male, age 61, both hemispheres
164.4
2008
Male, age 80, left hemisphere
146.7
Reticular pontine nucleus, caudal nTPM: 211.5
2092
Male, age 76, both hemispheres
248.9
2457
Female, age 91, both hemispheres
222.9
2559
Male, age 74, both hemispheres
221.8
2332
Male, age 80, right hemisphere
152.6
Reticular pontine nucleus, oral nTPM: 219.5
2366
Female, age 91, both hemispheres
266.9
2167
Male, age 76, both hemispheres
259.6
1939
Male, age 80, both hemispheres
231.9
2012
Female, age 85, both hemispheres
191.1
2361
Male, age 74, both hemispheres
147.7
Reticulotegmental nucleus nTPM: 217.8
2452
Male, age 74, both hemispheres
235.9
2333
Male, age 80, both hemispheres
223.8
2322
Female, age 91, both hemispheres
214.5
2325
Male, age 76, both hemispheres
197.0
Spinal trigeminal nucleus, oral nTPM: 201.7
1978
Male, age 76, both hemispheres
220.4
2164
Male, age 80, both hemispheres
213.0
2737
Female, age 85, both hemispheres
171.8
Subcoeruleus area nTPM: 222.3
2369
Female, age 85, left hemisphere
275.4
2451
Male, age 74, both hemispheres
246.9
2089
Male, age 76, left hemisphere
210.8
1958
Male, age 80, both hemispheres
191.4
2323
Female, age 91, left hemisphere
186.8
Superior olive nTPM: 206.5
2020
Male, age 76, both hemispheres
260.1
2329
Male, age 80, right hemisphere
220.8
2561
Female, age 91, both hemispheres
211.5
2364
Male, age 74, right hemisphere
185.9
1875
Female, age 85, both hemispheres
154.2
Ventral periolivary nuclei nTPM: 196.8
2023
Male, age 76, both hemispheres
249.6
2165
Male, age 80, both hemispheres
195.5
2794
Female, age 91, left hemisphere
176.6
2130
Female, age 85, both hemispheres
165.6
Ventrolateral tegmental area, A5 NE cell group nTPM: 204.9
2456
Female, age 91, both hemispheres
238.5
1959
Male, age 76, both hemispheres
231.5
2161
Male, age 80, both hemispheres
211.3
2840
Female, age 85, both hemispheres
203.9
2359
Male, age 61, both hemispheres
187.1
2449
Male, age 74, both hemispheres
157.3
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
121.6
Pig sample
Sample description
nTPM
Pons nTPM: 121.6
Samples: 4
Max nTPM: 164.7
Min nTPM: 103.0
Sample A
Female
105.3
Sample B
Female
103.0
Sample C
Male
113.3
Sample D
Male
164.7
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
