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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
126.3
nTPM
FANTOM5:
112.4
Scaled Tags Per Million
Pig:
76.1
nTPM
Allen mouse:
12.2
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 113.7
2301
Female, age 85, both hemispheres
156.3
2188
Female, age 91, both hemispheres
125.3
2090
Male, age 80, both hemispheres
100.9
1984
Male, age 76, both hemispheres
72.4
Dorsal cochlear nucleus nTPM: 85.7
2187
Female, age 91, both hemispheres
146.3
2802
Male, age 74, right hemisphere
81.2
2058
Male, age 76, both hemispheres
68.2
2378
Male, age 80, both hemispheres
67.1
2370
Male, age 61, both hemispheres
65.9
Dorsal tegmental nucleus nTPM: 88.3
2326
Male, age 74, both hemispheres
102.2
2083
Male, age 80, both hemispheres
101.5
1936
Male, age 76, left hemisphere
76.4
2358
Male, age 61, both hemispheres
73.0
Dorsolateral tegmental area nTPM: 94.3
2751
Female, age 85, both hemispheres
130.1
2337
Male, age 61, both hemispheres
115.3
2654
Male, age 80, both hemispheres
102.7
2360
Male, age 74, both hemispheres
65.5
2141
Male, age 76, both hemispheres
57.8
Kolliker-Fuse nucleus nTPM: 92.9
2793
Female, age 91, left hemisphere
119.9
2163
Male, age 80, both hemispheres
97.9
2315
Male, age 76, right hemisphere
61.1
Lateral lemniscal nuclei nTPM: 91.3
2320
Female, age 91, left hemisphere
106.4
2746
Female, age 85, left hemisphere
91.3
2453
Male, age 74, right hemisphere
91.2
2169
Male, age 76, both hemispheres
86.7
2036
Male, age 80, both hemispheres
80.8
Lateral parabrachial nucleus nTPM: 84.9
2792
Male, age 76, both hemispheres
98.4
2790
Male, age 61, both hemispheres
96.7
2013
Male, age 80, both hemispheres
76.8
2139
Female, age 85, right hemisphere
67.5
Lateral vestibular nucleus nTPM: 116.3
2311
Male, age 80, both hemispheres
140.0
2184
Male, age 76, both hemispheres
92.6
Locus coeruleus nTPM: 72.7
2720
Male, age 74, both hemispheres
93.2
2014
Male, age 55, unknown
88.4
2162
Male, age 80, both hemispheres
75.1
2123
Female, age 91, both hemispheres
70.9
2788
Male, age 74, unknown
61.1
2317
Female, age 72, unknown
60.2
1980
Male, age 76, both hemispheres
59.9
Medial parabrachial nucleus nTPM: 126.3
2170
Female, age 91, both hemispheres
224.5
2854
Male, age 80, both hemispheres
116.6
2463
Female, age 85, right hemisphere
111.7
2156
Male, age 61, both hemispheres
91.0
2786
Male, age 76, both hemispheres
88.0
Medial periolivary nuclei nTPM: 92.3
2791
Male, age 74, right hemisphere
103.4
2458
Female, age 91, both hemispheres
91.9
2081
Male, age 80, both hemispheres
91.3
2171
Female, age 85, both hemispheres
89.2
2063
Male, age 76, both hemispheres
85.8
Motor facial nucleus nTPM: 90.0
2126
Male, age 61, both hemispheres
109.8
2365
Male, age 74, right hemisphere
104.8
2697
Female, age 85, both hemispheres
89.9
2795
Female, age 91, both hemispheres
82.5
2062
Male, age 76, both hemispheres
78.6
2327
Male, age 80, both hemispheres
74.6
Motor trigeminal nucleus nTPM: 98.6
2321
Female, age 91, both hemispheres
130.6
2560
Male, age 74, both hemispheres
115.6
2335
Male, age 61, both hemispheres
86.5
2309
Male, age 76, both hemispheres
81.1
2079
Male, age 80, both hemispheres
79.2
Nuclei of the trapezoid body nTPM: 84.9
2159
Male, age 61, both hemispheres
92.1
2368
Female, age 91, both hemispheres
88.4
2166
Male, age 80, both hemispheres
88.0
2735
Female, age 85, both hemispheres
82.1
1983
Male, age 76, both hemispheres
73.9
Nucleus raphe magnus nTPM: 83.7
2455
Male, age 74, both hemispheres
92.1
2051
Male, age 76, both hemispheres
90.5
2459
Female, age 91, both hemispheres
89.6
2328
Male, age 80, both hemispheres
78.3
2172
Female, age 85, both hemispheres
76.6
2160
Male, age 61, both hemispheres
74.8
Paramedian reticular nucleus nTPM: 103.5
2052
Male, age 76, both hemispheres
118.1
2050
Female, age 85, both hemispheres
106.6
2057
Male, age 80, both hemispheres
103.4
2313
Male, age 61, both hemispheres
85.8
Pedunculopontine tegmental nucleus nTPM: 90.7
2338
Male, age 61, both hemispheres
112.5
2334
Male, age 80, both hemispheres
87.8
1921
Female, age 85, both hemispheres
71.8
Pontine nuclei nTPM: 100.0
2454
Male, age 74, left hemisphere
135.4
2109
Female, age 72, unknown
121.2
2319
Female, age 91, both hemispheres
118.8
1863
Male, age 55, unknown
102.0
1968
Male, age 76, left hemisphere
84.3
2787
Female, age 85, both hemispheres
82.9
2727
Male, age 61, right hemisphere
78.7
2115
Male, age 80, left hemisphere
76.5
Pontine raphe nucleus nTPM: 68.0
2122
Female, age 85, midline
75.4
2853
Male, age 76, midline
60.7
Posteroventral cochlear nucleus nTPM: 101.0
2341
Male, age 80, both hemispheres
142.6
2135
Female, age 91, both hemispheres
122.9
2070
Male, age 76, both hemispheres
84.2
2371
Male, age 61, both hemispheres
78.8
2752
Female, age 85, both hemispheres
76.3
Principal sensory trigeminal nucleus nTPM: 94.2
2367
Female, age 91, left hemisphere
122.6
2324
Male, age 76, both hemispheres
89.5
2008
Male, age 80, left hemisphere
84.9
2158
Male, age 61, both hemispheres
80.0
Reticular pontine nucleus, caudal nTPM: 102.8
2559
Male, age 74, both hemispheres
145.8
2457
Female, age 91, both hemispheres
105.9
2332
Male, age 80, right hemisphere
80.1
2092
Male, age 76, both hemispheres
79.4
Reticular pontine nucleus, oral nTPM: 108.8
2361
Male, age 74, both hemispheres
171.1
2012
Female, age 85, both hemispheres
98.0
1939
Male, age 80, both hemispheres
97.4
2366
Female, age 91, both hemispheres
94.4
2167
Male, age 76, both hemispheres
83.0
Reticulotegmental nucleus nTPM: 96.3
2322
Female, age 91, both hemispheres
124.1
2452
Male, age 74, both hemispheres
98.9
2333
Male, age 80, both hemispheres
85.0
2325
Male, age 76, both hemispheres
77.2
Spinal trigeminal nucleus, oral nTPM: 81.2
2164
Male, age 80, both hemispheres
102.8
2737
Female, age 85, both hemispheres
78.3
1978
Male, age 76, both hemispheres
62.4
Subcoeruleus area nTPM: 93.1
2369
Female, age 85, left hemisphere
136.0
1958
Male, age 80, both hemispheres
96.3
2089
Male, age 76, left hemisphere
85.6
2451
Male, age 74, both hemispheres
77.5
2323
Female, age 91, left hemisphere
70.2
Superior olive nTPM: 91.2
2364
Male, age 74, right hemisphere
108.5
2329
Male, age 80, right hemisphere
91.7
2020
Male, age 76, both hemispheres
87.7
2561
Female, age 91, both hemispheres
86.2
1875
Female, age 85, both hemispheres
81.9
Ventral periolivary nuclei nTPM: 85.4
2023
Male, age 76, both hemispheres
92.3
2165
Male, age 80, both hemispheres
86.5
2794
Female, age 91, left hemisphere
81.6
2130
Female, age 85, both hemispheres
81.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 90.0
2359
Male, age 61, both hemispheres
101.0
2449
Male, age 74, both hemispheres
96.0
2840
Female, age 85, both hemispheres
92.3
2456
Female, age 91, both hemispheres
90.6
2161
Male, age 80, both hemispheres
80.4
1959
Male, age 76, both hemispheres
79.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
76.1
Pig sample
Sample description
nTPM
Pons nTPM: 76.1
Samples: 4
Max nTPM: 106.9
Min nTPM: 54.1
Sample A
Female
78.2
Sample B
Female
54.1
Sample C
Male
65.1
Sample D
Male
106.9
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
