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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCDC2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
197.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
192.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
189.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
183.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
125.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
119.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
115.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
100.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
93.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
83.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
77.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
62.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
60.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
57.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
54.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
46.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
43.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
39.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
31.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCDC2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.2
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
173.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
129.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
119.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
113.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
101.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
90.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
85.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
67.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
64.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
62.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
61.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
58.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
55.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
45.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
39.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
36.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
3.1
743
Tumor
3.0
131
Tumor
2.2
671
Tumor
1.9
975
Tumor
1.8
331
Tumor
1.8
881
Tumor
1.8
1025
Tumor
1.7
545
Tumor
1.7
187
Tumor
1.7
188
Normal
1.5
877
Tumor
1.5
172
Normal
1.4
818
Normal
1.4
444
Normal
1.3
641
Tumor
1.3
1031
Tumor
1.2
268
Normal
1.2
283
Tumor
1.2
162
Normal
1.2
478
Normal
1.2
161
Tumor
1.1
517
Tumor
1.1
923
Tumor
1.1
285
Tumor
1.1
874
Normal
1.1
186
Normal
1.1
697
Tumor
1.0
192
Normal
1.0
447
Tumor
1.0
1021
Tumor
1.0
553
Tumor
1.0
635
Tumor
0.9
271
Tumor
0.9
148
Normal
0.8
132
Normal
0.8
185
Tumor
0.8
384
Normal
0.8
312
Normal
0.8
713
Tumor
0.8
538
Normal
0.8
213
Tumor
0.8
284
Normal
0.7
917
Tumor
0.7
422
Normal
0.7
351
Tumor
0.7
354
Normal
0.7
473
Tumor
0.7
916
Normal
0.6
433
Tumor
0.6
976
Normal
0.6
1042
Normal
0.6
852
Normal
0.6
423
Tumor
0.6
214
Normal
0.6
498
Normal
0.6
497
Tumor
0.6
171
Tumor
0.6
352
Normal
0.6
695
Tumor
0.5
924
Normal
0.5
524
Normal
0.5
492
Normal
0.5
884
Normal
0.5
364
Normal
0.5
146
Normal
0.5
426
Normal
0.5
434
Normal
0.5
277
Tumor
0.5
358
Normal
0.5
416
Normal
0.5
661
Tumor
0.4
536
Normal
0.4
546
Normal
0.4
817
Tumor
0.4
967
Tumor
0.4
212
Normal
0.4
816
Normal
0.4
858
Normal
0.4
278
Normal
0.4
716
Normal
0.4
664
Normal
0.3
1044
Normal
0.3
883
Tumor
0.3
815
Tumor
0.3
728
Normal
0.3
224
Normal
0.3
138
Normal
0.3
662
Normal
0.3
666
Normal
0.3
341
Tumor
0.3
137
Tumor
0.3
421
Tumor
0.3
1043
Tumor
0.3
455
Tumor
0.3
272
Normal
0.3
863
Tumor
0.3
1032
Normal
0.3
913
Tumor
0.3
227
Tumor
0.3
362
Normal
0.3
464
Normal
0.3
722
Normal
0.3
648
Normal
0.2
468
Normal
0.2
342
Normal
0.2
696
Normal
0.2
413
Tumor
0.2
824
Normal
0.2
136
Normal
0.2
968
Normal
0.2
297
Tumor
0.2
376
Normal
0.2
443
Tumor
0.2
925
Tumor
0.2
228
Normal
0.2
1022
Normal
0.2
221
Tumor
0.2
862
Normal
0.2
642
Normal
0.2
1028
Normal
0.2
723
Tumor
0.2
368
Normal
0.2
366
Normal
0.2
361
Tumor
0.2
428
Normal
0.2
262
Normal
0.2
452
Normal
0.2
311
Tumor
0.2
355
Tumor
0.2
878
Normal
0.2
448
Normal
0.1
363
Tumor
0.1
616
Normal
0.1
344
Normal
0.1
527
Tumor
0.1
456
Normal
0.1
628
Normal
0.1
921
Tumor
0.1
1046
Normal
0.1
232
Normal
0.1
965
Tumor
0.1
431
Tumor
0.1
471
Tumor
0.1
738
Normal
0.1
672
Normal
0.1
488
Normal
0.1
258
Normal
0.1
742
Normal
0.1
365
Tumor
0.1
424
Normal
0.1
446
Normal
0.1
483
Tumor
0.1
491
Tumor
0.1
353
Tumor
0.1
332
Normal
0.1
918
Normal
0.0
357
Tumor
0.0
493
Tumor
0.0
516
Normal
0.0
744
Normal
0.0
222
Normal
0.0
958
Normal
0.0
196
Normal
0.0
514
Normal
0.0
383
Tumor
0.0
857
Tumor
0.0
714
Normal
0.0
461
Tumor
0.0
966
Normal
0.0
523
Tumor
0.0
518
Normal
0.0
494
Normal
0.0
472
Normal
0.0
721
Tumor
0.0
686
Normal
-0.1
145
Tumor
-0.1
135
Tumor
-0.1
356
Normal
-0.1
823
Tumor
-0.1
414
Normal
-0.1
432
Normal
-0.1
554
Normal
-0.1
466
Normal
-0.1
465
Tumor
-0.1
142
Normal
-0.1
484
Normal
-0.1
217
Tumor
-0.1
912
Normal
-0.1
462
Normal
-0.1
636
Normal
-0.1
926
Normal
-0.2
445
Tumor
-0.2
914
Normal
-0.2
343
Tumor
-0.2
528
Normal
-0.2
698
Normal
-0.2
375
Tumor
-0.2
412
Normal
-0.2
618
Normal
-0.2
328
Normal
-0.2
474
Normal
-0.2
882
Normal
-0.2
436
Normal
-0.2
218
Normal
-0.2
1026
Normal
-0.2
534
Normal
-0.2
727
Tumor
-0.2
786
Normal
-0.3
191
Tumor
-0.3
487
Tumor
-0.3
741
Tumor
-0.3
745
Tumor
-0.3
1045
Tumor
-0.3
868
Normal
-0.3
922
Normal
-0.3
286
Normal
-0.3
513
Tumor
-0.3
627
Tumor
-0.3
617
Tumor
-0.3
231
Tumor
-0.3
864
Normal
-0.4
482
Normal
-0.4
515
Tumor
-0.4
814
Normal
-0.4
537
Tumor
-0.4
756
Normal
-0.4
367
Tumor
-0.4
425
Tumor
-0.4
415
Tumor
-0.4
211
Tumor
-0.4
261
Tumor
-0.4
195
Tumor
-0.4
665
Tumor
-0.4
737
Tumor
-0.4
746
Normal
-0.5
141
Tumor
-0.5
715
Tumor
-0.5
451
Tumor
-0.5
647
Tumor
-0.5
873
Tumor
-0.5
427
Tumor
-0.5
964
Normal
-0.5
526
Normal
-0.5
724
Normal
-0.5
866
Normal
-0.6
813
Tumor
-0.6
257
Tumor
-0.6
467
Tumor
-0.6
851
Tumor
-0.6
481
Tumor
-0.7
615
Tumor
-0.7
685
Tumor
-0.7
435
Tumor
-0.7
463
Tumor
-0.7
777
Tumor
-0.8
911
Tumor
-0.8
267
Tumor
-0.8
298
Normal
-0.8
525
Tumor
-0.8
778
Normal
-0.8
223
Tumor
-0.8
535
Tumor
-0.9
314
Normal
-0.9
477
Tumor
-0.9
327
Tumor
-0.9
785
Tumor
-1.0
963
Tumor
-1.0
755
Tumor
-1.0
915
Tumor
-1.1
411
Tumor
-1.1
533
Tumor
-1.1
663
Tumor
-1.2
313
Tumor
-1.4
867
Tumor
-1.4
1041
Tumor
-1.4
861
Tumor
-1.5
1027
Tumor
-1.6
865
Tumor
-1.6
957
Tumor
-1.9
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
