MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.7 nTPM
HPA Brain:14.9 nTPM
GTEx:1.7 nTPM
FANTOM5:3.4 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:0.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.9
2666 Male, age 74, left hemisphere 16.6
1830 Male, age 51, unknown 13.8
2219 Male, age 76, both hemispheres 13.7
1833 Male, age 53, unknown 13.6
2019 Male, age 18, unknown 11.0
2586 Male, age 75, left hemisphere 11.0
1827 Male, age 72, unknown 10.9
2828 Female, age 72, unknown 10.5
2411 Female, age 72, unknown 9.8
1870 Female, age 42, unknown 8.4
Dorsal raphe nucleus
nTPM: 13.3
2016 Female, age 72, unknown 15.5
2750 Male, age 76, both hemispheres 14.1
1828 Male, age 53, unknown 13.1
2047 Male, age 72, unknown 12.2
2298 Female, age 72, unknown 11.8
Inferior colliculus
nTPM: 10.9
2849 Male, age 72, unknown 13.4
1890 Male, age 53, unknown 11.8
2097 Female, age 72, unknown 9.6
1848 Female, age 42, unknown 8.9
Median raphe nucleus
nTPM: 14.3
2220 Male, age 76, midline 14.3
Periaquaductal grey, anterior
nTPM: 10.8
1947 Male, age 18, unknown 11.7
1795 Male, age 51, unknown 11.2
2502 Female, age 75, unknown 9.6
Periaquaductal grey, dorsal
nTPM: 13.4
2850 Male, age 76, both hemispheres 15.9
1831 Male, age 72, unknown 15.6
2464 Female, age 72, unknown 11.9
1840 Male, age 53, unknown 10.2
Periaquaductal grey, lateral
nTPM: 14.9
2140 Male, age 76, both hemispheres 17.5
2272 Male, age 74, both hemispheres 14.6
2053 Male, age 18, unknown 12.7
Pretectal area
nTPM: 11.1
2316 Male, age 76, right hemisphere 15.1
2407 Male, age 75, both hemispheres 15.1
2273 Male, age 74, both hemispheres 12.8
2224 Female, age 72, unknown 12.1
2825 Male, age 18, unknown 12.1
1816 Male, age 51, unknown 10.5
1944 Female, age 72, unknown 9.9
2667 Female, age 75, unknown 9.3
1815 Male, age 53, unknown 9.2
1817 Female, age 42, unknown 7.9
2007 Male, age 72, unknown 7.8
Red nucleus
nTPM: 10.9
2823 Male, age 76, right hemisphere 13.5
2227 Male, age 72, unknown 12.1
2725 Female, age 75, unknown 11.8
2769 Male, age 72, unknown 11.7
1865 Male, age 51, unknown 11.6
1904 Male, age 53, unknown 11.3
2503 Female, age 72, unknown 11.2
2584 Male, age 75, left hemisphere 10.9
2785 Male, age 18, unknown 10.8
1954 Female, age 42, unknown 10.2
1821 Female, age 72, unknown 8.1
2588 Male, age 74, left hemisphere 7.9
Substantia nigra
nTPM: 13.6
2590 Female, age 75, unknown 21.0
2583 Male, age 75, right hemisphere 16.7
1941 Male, age 53, unknown 16.2
2665 Male, age 74, both hemispheres 16.2
2699 Male, age 18, unknown 14.5
2241 Male, age 72, unknown 11.4
2409 Female, age 72, unknown 10.7
1851 Male, age 51, unknown 10.3
1916 Female, age 42, unknown 10.3
1889 Female, age 72, unknown 8.5
Superior colliculus
nTPM: 11.5
2664 Male, age 75, both hemispheres 15.4
2587 Male, age 74, left hemisphere 13.8
1913 Female, age 42, unknown 12.1
1995 Male, age 72, unknown 11.9
2087 Female, age 72, unknown 11.9
1839 Male, age 51, unknown 11.7
1895 Male, age 76, right hemisphere 10.5
2261 Male, age 18, unknown 10.5
1796 Male, age 53, unknown 8.8
2668 Female, age 75, unknown 8.3
Ventral tegmental area
nTPM: 12.4
2021 Male, age 53, unknown 14.7
2218 Male, age 76, both hemispheres 13.1
2223 Female, age 72, unknown 12.9
1942 Male, age 51, unknown 12.0
1915 Female, age 42, unknown 11.8
2410 Female, age 72, unknown 9.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.7
Samples: 139

Max nTPM: 13.5
Min nTPM: 0.3
Std nTPM: 1.3
Median nTPM: 1.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 13.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 6.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 4.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 3.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 3.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 3.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 3.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 2.9
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 2.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 2.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 2.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.4
FF:10158-103A5 76 years, female 3.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 4.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.2
Samples: 4

Max nTPM: 10.4
Min nTPM: 1.8
Sample A Female 2.5
Sample B Female 10.4
Sample C Male 1.8
Sample D Male 1.9
Midbrain
nTPM: 1.5
Samples: 4

Max nTPM: 2.6
Min nTPM: 0.4
Sample A Female 0.9
Sample B Female 1.9
Sample C Male 2.6
Sample D Male 0.4
Periaqueductal gray
nTPM: 3.1
Samples: 3

Max nTPM: 3.9
Min nTPM: 2.6
Sample B Female 2.7
Sample C Male 3.9
Sample D Male 2.6
Superior colliculi
nTPM: 1.8
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.6
Sample A Female 1.9
Sample B Female 2.2
Sample C Male 1.6
Sample D Male 1.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.6
Sample A Male 0.6
Sample B Male 0.6
Sample C Female 0.6
Sample D Female 0.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
81599616 Antisense, RP_071126_04_D08, Mouse strain C57BL/6J (56 days, male) 0.4

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