We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NHP2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
121.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
311.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
296.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
292.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
280.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
274.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
272.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
271.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
268.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
248.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
246.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
242.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
242.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
240.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
237.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
233.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
232.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
231.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
228.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
227.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
227.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
223.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
220.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
218.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
213.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
207.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
204.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
204.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
201.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
200.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
197.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
196.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
196.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
194.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
194.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
192.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
192.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
192.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
192.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
190.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
189.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
187.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
186.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
186.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
185.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
183.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
183.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
181.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
180.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
180.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
179.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
178.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
176.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
176.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
175.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
175.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
175.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
174.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
174.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
173.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
172.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
171.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
171.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
170.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
170.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
170.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
169.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
167.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
165.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
164.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
163.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
163.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
161.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
160.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
157.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
156.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
156.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
155.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
155.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
155.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
155.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
154.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
154.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
154.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
154.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
152.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
152.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
152.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
151.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
150.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
150.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
150.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
148.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
148.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
148.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
148.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
147.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
147.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
146.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
146.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
146.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
146.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
146.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
146.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
145.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
144.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
143.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
143.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
142.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
142.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
141.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
141.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
140.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
140.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
139.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
137.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
137.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
137.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
136.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
136.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
135.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
135.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
135.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
134.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
132.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
131.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
131.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
131.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
131.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
130.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
130.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
129.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
128.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
128.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
128.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
127.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
127.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
127.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
126.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
125.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
125.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
125.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
124.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
124.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
124.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
123.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
123.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
122.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
122.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
121.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
121.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
120.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
120.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
119.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
119.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
119.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
119.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
119.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
119.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
119.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
118.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
118.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
117.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
117.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
117.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
115.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
115.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
114.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
114.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
114.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
114.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
113.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
113.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
113.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
112.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
112.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
111.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
111.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
111.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
111.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
110.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
110.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
110.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
109.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
109.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
109.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
108.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
107.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
106.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
106.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
106.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
105.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
105.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
104.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
103.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
102.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
102.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
102.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
101.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
101.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
100.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
100.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
100.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
100.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
100.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
100.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
100.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
100.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
99.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
99.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
99.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
98.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
98.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
98.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
98.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
98.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
98.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
97.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
97.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
96.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
96.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
96.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
95.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
95.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
94.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
94.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
94.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
94.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
94.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
94.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
93.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
93.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
93.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
92.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
92.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
92.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
92.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
92.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
92.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
92.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
92.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
91.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
91.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
91.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
91.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
91.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
91.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
90.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
90.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
90.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
90.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
89.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
89.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
89.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
88.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
88.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
88.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
88.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
88.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
88.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
87.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
87.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
86.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
86.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
86.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
85.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
85.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
85.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
85.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
84.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
84.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
83.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
83.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
83.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
83.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
83.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
82.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
82.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
82.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
82.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
81.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
81.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
81.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
81.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
81.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
81.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
80.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
79.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
79.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
79.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
79.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
79.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
79.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
78.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
78.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
78.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
78.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
77.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
77.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
77.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
77.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
76.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
76.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
76.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
76.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
75.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
75.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
75.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
74.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
74.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
74.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
74.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
74.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
74.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
73.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
73.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
73.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
72.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
71.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
71.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
69.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
69.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
69.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
66.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
66.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
64.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
64.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
64.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
63.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
63.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
63.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
62.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
62.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
61.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
61.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
61.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
60.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
60.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
59.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
58.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
57.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
57.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
56.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
56.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
53.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
53.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
53.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
51.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
50.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
49.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
49.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
48.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
48.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
47.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
47.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
46.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
46.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
44.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
42.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
41.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NHP2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.0
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
306.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
258.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
193.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
188.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
149.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
142.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
132.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
126.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
124.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
120.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
118.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
116.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
115.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
113.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
113.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
110.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
108.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
107.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
106.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
105.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
104.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
103.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
103.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
102.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
102.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
100.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
100.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
100.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
94.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
93.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
93.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
91.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
91.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
90.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
90.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
90.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
90.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
88.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
88.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
87.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
87.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
87.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
87.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
86.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
86.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
86.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
86.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
86.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
84.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
83.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
83.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
83.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
81.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
81.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
79.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
79.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
79.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
78.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
77.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
77.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
77.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
77.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
76.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
76.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
76.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
76.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
75.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
75.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
74.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
73.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
73.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
72.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
72.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
72.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
72.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
71.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
71.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
71.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
70.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
70.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
69.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
69.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
69.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
69.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
69.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
69.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
68.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
68.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
68.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
66.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
66.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
66.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
65.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
65.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
65.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
64.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
64.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
64.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
63.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
63.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
63.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
63.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
62.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
62.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
61.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
61.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
60.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
60.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
59.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
59.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
59.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
59.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
59.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
58.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
58.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
58.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
58.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
57.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
57.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
57.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
57.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
57.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
57.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
56.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
56.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
56.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
55.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
54.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
54.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
54.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
54.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
54.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
54.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
54.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
53.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
53.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
53.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
51.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
51.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
51.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
51.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
50.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
50.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
50.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
50.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
49.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
49.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
49.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
48.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
47.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
47.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
47.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
46.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
46.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
46.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
46.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
46.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
45.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
44.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
44.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
43.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
42.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
42.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
42.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
41.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
41.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
41.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
40.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
39.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
38.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
38.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
38.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
37.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
37.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
37.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
37.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
37.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
36.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
35.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
35.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
34.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
33.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
32.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
395
Tumor
1.1
557
Tumor
1.0
685
Tumor
0.8
331
Tumor
0.8
261
Tumor
0.7
285
Tumor
0.6
351
Tumor
0.6
473
Tumor
0.6
367
Tumor
0.6
1021
Tumor
0.6
131
Tumor
0.6
951
Tumor
0.5
965
Tumor
0.5
665
Tumor
0.5
483
Tumor
0.5
112
Tumor
0.5
123
Tumor
0.5
925
Tumor
0.5
497
Tumor
0.5
231
Tumor
0.5
535
Tumor
0.5
363
Tumor
0.4
471
Tumor
0.4
715
Tumor
0.4
383
Tumor
0.4
881
Tumor
0.4
937
Tumor
0.4
671
Tumor
0.4
171
Tumor
0.4
113
Tumor
0.4
385
Tumor
0.3
727
Tumor
0.3
477
Tumor
0.3
227
Tumor
0.3
425
Tumor
0.3
545
Tumor
0.3
923
Tumor
0.3
1025
Tumor
0.3
481
Tumor
0.3
661
Tumor
0.3
413
Tumor
0.3
817
Tumor
0.2
185
Tumor
0.2
393
Tumor
0.2
813
Tumor
0.2
724
Normal
0.2
785
Tumor
0.2
1031
Tumor
0.2
211
Tumor
0.2
815
Tumor
0.2
737
Tumor
0.2
427
Tumor
0.2
977
Tumor
0.2
387
Tumor
0.2
443
Tumor
0.2
375
Tumor
0.2
431
Tumor
0.2
741
Tumor
0.2
391
Tumor
0.2
883
Tumor
0.2
467
Tumor
0.2
527
Tumor
0.1
865
Tumor
0.1
223
Tumor
0.1
411
Tumor
0.1
221
Tumor
0.1
361
Tumor
0.1
271
Tumor
0.1
487
Tumor
0.1
1041
Tumor
0.1
975
Tumor
0.1
1045
Tumor
0.1
127
Tumor
0.1
697
Tumor
0.1
567
Tumor
0.1
743
Tumor
0.0
1015
Tumor
0.0
983
Tumor
0.0
137
Tumor
0.0
433
Tumor
0.0
447
Tumor
0.0
461
Tumor
0.0
861
Tumor
0.0
913
Tumor
0.0
455
Tumor
0.0
362
Normal
0.0
355
Tumor
0.0
421
Tumor
0.0
283
Tumor
0.0
537
Tumor
0.0
523
Tumor
0.0
744
Normal
0.0
415
Tumor
0.0
267
Tumor
0.0
327
Tumor
0.0
635
Tumor
0.0
698
Normal
0.0
814
Normal
0.0
877
Tumor
0.0
563
Tumor
0.0
533
Tumor
0.0
465
Tumor
0.0
394
Normal
0.0
867
Tumor
-0.1
376
Normal
-0.1
217
Tumor
-0.1
493
Tumor
-0.1
445
Tumor
-0.1
873
Tumor
-0.1
1046
Normal
-0.1
525
Tumor
-0.1
341
Tumor
-0.1
368
Normal
-0.1
161
Tumor
-0.1
135
Tumor
-0.1
343
Tumor
-0.1
513
Tumor
-0.1
755
Tumor
-0.1
517
Tumor
-0.1
695
Tumor
-0.1
911
Tumor
-0.1
412
Normal
-0.1
448
Normal
-0.1
344
Normal
-0.1
388
Normal
-0.1
386
Normal
-0.1
278
Normal
-0.1
366
Normal
-0.1
957
Tumor
-0.1
365
Tumor
-0.1
857
Tumor
-0.1
187
Tumor
-0.1
943
Tumor
-0.1
132
Normal
-0.1
921
Tumor
-0.1
728
Normal
-0.1
516
Normal
-0.1
423
Tumor
-0.1
917
Tumor
-0.1
641
Tumor
-0.2
396
Normal
-0.2
1044
Normal
-0.2
492
Normal
-0.2
696
Normal
-0.2
277
Tumor
-0.2
136
Normal
-0.2
647
Tumor
-0.2
571
Tumor
-0.2
328
Normal
-0.2
488
Normal
-0.2
298
Normal
-0.2
384
Normal
-0.2
1013
Tumor
-0.2
353
Tumor
-0.2
212
Normal
-0.2
314
Normal
-0.2
146
Normal
-0.2
1032
Normal
-0.2
297
Tumor
-0.2
714
Normal
-0.2
474
Normal
-0.2
284
Normal
-0.2
722
Normal
-0.2
451
Tumor
-0.2
147
Tumor
-0.2
617
Tumor
-0.2
228
Normal
-0.2
553
Tumor
-0.2
955
Tumor
-0.2
1016
Normal
-0.2
213
Tumor
-0.2
686
Normal
-0.2
672
Normal
-0.2
142
Normal
-0.2
878
Normal
-0.2
662
Normal
-0.2
114
Normal
-0.2
976
Normal
-0.2
466
Normal
-0.3
313
Tumor
-0.3
851
Tumor
-0.3
573
Tumor
-0.3
416
Normal
-0.3
188
Normal
-0.3
452
Normal
-0.3
536
Normal
-0.3
518
Normal
-0.3
172
Normal
-0.3
777
Tumor
-0.3
392
Normal
-0.3
463
Tumor
-0.3
498
Normal
-0.3
138
Normal
-0.3
358
Normal
-0.3
964
Normal
-0.3
312
Normal
-0.3
914
Normal
-0.3
148
Normal
-0.3
464
Normal
-0.3
472
Normal
-0.3
286
Normal
-0.3
915
Tumor
-0.3
1042
Normal
-0.3
268
Normal
-0.3
356
Normal
-0.3
434
Normal
-0.3
716
Normal
-0.3
1026
Normal
-0.3
272
Normal
-0.3
956
Normal
-0.3
436
Normal
-0.3
666
Normal
-0.3
364
Normal
-0.3
195
Tumor
-0.3
742
Normal
-0.3
574
Normal
-0.3
162
Normal
-0.3
968
Normal
-0.3
664
Normal
-0.3
224
Normal
-0.3
963
Tumor
-0.3
538
Normal
-0.3
141
Tumor
-0.3
515
Tumor
-0.3
342
Normal
-0.3
546
Normal
-0.3
1022
Normal
-0.3
196
Normal
-0.3
332
Normal
-0.3
648
Normal
-0.3
944
Normal
-0.3
462
Normal
-0.3
778
Normal
-0.4
922
Normal
-0.4
721
Tumor
-0.4
1028
Normal
-0.4
1027
Tumor
-0.4
192
Normal
-0.4
491
Tumor
-0.4
863
Tumor
-0.4
1043
Tumor
-0.4
126
Normal
-0.4
966
Normal
-0.4
981
Tumor
-0.4
424
Normal
-0.4
357
Tumor
-0.4
482
Normal
-0.4
564
Normal
-0.4
663
Tumor
-0.4
627
Tumor
-0.4
435
Tumor
-0.4
918
Normal
-0.4
478
Normal
-0.4
258
Normal
-0.4
432
Normal
-0.4
468
Normal
-0.4
186
Normal
-0.4
214
Normal
-0.4
823
Tumor
-0.4
534
Normal
-0.4
524
Normal
-0.4
484
Normal
-0.4
494
Normal
-0.4
967
Tumor
-0.4
745
Tumor
-0.4
864
Normal
-0.4
526
Normal
-0.4
422
Normal
-0.4
124
Normal
-0.4
145
Tumor
-0.4
444
Normal
-0.4
311
Tumor
-0.4
232
Normal
-0.4
723
Tumor
-0.5
456
Normal
-0.5
191
Tumor
-0.5
738
Normal
-0.5
866
Normal
-0.5
262
Normal
-0.5
257
Tumor
-0.5
958
Normal
-0.5
128
Normal
-0.5
858
Normal
-0.5
558
Normal
-0.5
916
Normal
-0.5
218
Normal
-0.5
824
Normal
-0.5
354
Normal
-0.5
924
Normal
-0.5
952
Normal
-0.5
642
Normal
-0.5
352
Normal
-0.5
984
Normal
-0.5
554
Normal
-0.5
926
Normal
-0.5
426
Normal
-0.5
746
Normal
-0.5
954
Normal
-0.5
874
Normal
-0.5
953
Tumor
-0.5
978
Normal
-0.5
982
Normal
-0.5
572
Normal
-0.6
446
Normal
-0.6
868
Normal
-0.6
125
Tumor
-0.6
222
Normal
-0.6
852
Normal
-0.6
882
Normal
-0.6
111
Normal
-0.6
862
Normal
-0.6
713
Tumor
-0.6
618
Normal
-0.6
786
Normal
-0.6
938
Normal
-0.6
615
Tumor
-0.6
514
Normal
-0.6
756
Normal
-0.7
568
Normal
-0.7
428
Normal
-0.7
1014
Normal
-0.7
628
Normal
-0.7
818
Normal
-0.7
636
Normal
-0.7
414
Normal
-0.7
816
Normal
-0.7
528
Normal
-0.8
912
Normal
-0.8
616
Normal
-0.9
884
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.