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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXO38 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXO38 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.4
Number of samples
231
Samples
Sample
Description
TPM
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
353
Tumor
0.9
161
Tumor
0.7
777
Tumor
0.6
665
Tumor
0.6
341
Tumor
0.5
527
Tumor
0.5
431
Tumor
0.5
473
Tumor
0.5
261
Tumor
0.4
258
Normal
0.4
1041
Tumor
0.4
227
Tumor
0.4
423
Tumor
0.4
721
Tumor
0.4
357
Tumor
0.4
313
Tumor
0.4
722
Normal
0.4
112
Tumor
0.4
383
Tumor
0.3
513
Tumor
0.3
967
Tumor
0.3
465
Tumor
0.3
127
Tumor
0.3
482
Normal
0.3
666
Normal
0.3
481
Tumor
0.3
232
Normal
0.3
563
Tumor
0.3
648
Normal
0.3
642
Normal
0.3
223
Tumor
0.3
268
Normal
0.3
435
Tumor
0.3
185
Tumor
0.3
162
Normal
0.3
497
Tumor
0.3
616
Normal
0.3
965
Tumor
0.3
366
Normal
0.3
963
Tumor
0.3
462
Normal
0.3
221
Tumor
0.3
146
Normal
0.3
471
Tumor
0.3
615
Tumor
0.3
937
Tumor
0.3
272
Normal
0.3
641
Tumor
0.3
128
Normal
0.3
314
Normal
0.3
664
Normal
0.3
534
Normal
0.2
331
Tumor
0.2
977
Tumor
0.2
728
Normal
0.2
342
Normal
0.2
618
Normal
0.2
111
Normal
0.2
358
Normal
0.2
298
Normal
0.2
467
Tumor
0.2
141
Tumor
0.2
361
Tumor
0.2
472
Normal
0.2
187
Tumor
0.2
468
Normal
0.2
1022
Normal
0.2
636
Normal
0.2
964
Normal
0.2
464
Normal
0.2
222
Normal
0.2
882
Normal
0.2
744
Normal
0.2
755
Tumor
0.2
395
Tumor
0.2
114
Normal
0.2
332
Normal
0.2
1013
Tumor
0.2
1026
Normal
0.2
145
Tumor
0.2
647
Tumor
0.2
461
Tumor
0.2
746
Normal
0.2
148
Normal
0.2
354
Normal
0.2
394
Normal
0.2
214
Normal
0.2
714
Normal
0.2
865
Tumor
0.2
432
Normal
0.2
923
Tumor
0.2
413
Tumor
0.2
863
Tumor
0.2
672
Normal
0.2
392
Normal
0.2
862
Normal
0.2
196
Normal
0.2
124
Normal
0.2
172
Normal
0.2
452
Normal
0.2
376
Normal
0.2
123
Tumor
0.2
132
Normal
0.2
186
Normal
0.2
456
Normal
0.2
278
Normal
0.2
517
Tumor
0.2
262
Normal
0.1
515
Tumor
0.1
312
Normal
0.1
433
Tumor
0.1
571
Tumor
0.1
813
Tumor
0.1
883
Tumor
0.1
136
Normal
0.1
1042
Normal
0.1
126
Normal
0.1
365
Tumor
0.1
443
Tumor
0.1
852
Normal
0.1
138
Normal
0.1
352
Normal
0.1
487
Tumor
0.1
466
Normal
0.1
713
Tumor
0.1
958
Normal
0.1
445
Tumor
0.1
966
Normal
0.1
436
Normal
0.1
627
Tumor
0.1
368
Normal
0.1
816
Normal
0.1
446
Normal
0.1
267
Tumor
0.1
662
Normal
0.1
716
Normal
0.1
1014
Normal
0.1
344
Normal
0.1
628
Normal
0.1
715
Tumor
0.1
286
Normal
0.1
386
Normal
0.1
474
Normal
0.1
546
Normal
0.1
1032
Normal
0.1
742
Normal
0.1
518
Normal
0.1
455
Tumor
0.1
388
Normal
0.1
976
Normal
0.1
858
Normal
0.1
938
Normal
0.1
422
Normal
0.1
428
Normal
0.1
526
Normal
0.1
444
Normal
0.1
1031
Tumor
0.1
416
Normal
0.1
818
Normal
0.1
564
Normal
0.1
356
Normal
0.1
878
Normal
0.1
277
Tumor
0.1
411
Tumor
0.1
171
Tumor
0.1
228
Normal
0.1
824
Normal
0.1
686
Normal
0.1
738
Normal
0.1
426
Normal
0.1
663
Tumor
0.1
188
Normal
0.1
756
Normal
0.1
955
Tumor
0.1
695
Tumor
0.0
913
Tumor
0.0
364
Normal
0.0
1028
Normal
0.0
362
Normal
0.0
635
Tumor
0.0
881
Tumor
0.0
414
Normal
0.0
424
Normal
0.0
192
Normal
0.0
874
Normal
0.0
554
Normal
0.0
984
Normal
0.0
861
Tumor
0.0
137
Tumor
0.0
723
Tumor
0.0
864
Normal
0.0
434
Normal
0.0
484
Normal
0.0
1016
Normal
0.0
981
Tumor
0.0
568
Normal
0.0
982
Normal
0.0
523
Tumor
0.0
396
Normal
0.0
866
Normal
0.0
478
Normal
0.0
698
Normal
0.0
696
Normal
0.0
328
Normal
0.0
867
Tumor
0.0
224
Normal
0.0
412
Normal
0.0
271
Tumor
0.0
944
Normal
0.0
142
Normal
0.0
284
Normal
0.0
391
Tumor
0.0
924
Normal
0.0
492
Normal
0.0
528
Normal
0.0
815
Tumor
0.0
912
Normal
0.0
384
Normal
0.0
514
Normal
0.0
1025
Tumor
0.0
285
Tumor
0.0
983
Tumor
0.0
873
Tumor
0.0
218
Normal
0.0
297
Tumor
0.0
778
Normal
0.0
574
Normal
-0.1
868
Normal
-0.1
1043
Tumor
-0.1
968
Normal
-0.1
572
Normal
-0.1
911
Tumor
-0.1
538
Normal
-0.1
978
Normal
-0.1
113
Tumor
-0.1
257
Tumor
-0.1
1027
Tumor
-0.1
363
Tumor
-0.1
355
Tumor
-0.1
857
Tumor
-0.1
212
Normal
-0.1
477
Tumor
-0.1
524
Normal
-0.1
498
Normal
-0.1
351
Tumor
-0.1
1046
Normal
-0.1
914
Normal
-0.1
956
Normal
-0.1
558
Normal
-0.1
814
Normal
-0.1
213
Tumor
-0.1
191
Tumor
-0.1
494
Normal
-0.1
786
Normal
-0.1
925
Tumor
-0.1
516
Normal
-0.1
915
Tumor
-0.1
231
Tumor
-0.1
671
Tumor
-0.2
952
Normal
-0.2
877
Tumor
-0.2
617
Tumor
-0.2
954
Normal
-0.2
488
Normal
-0.2
327
Tumor
-0.2
135
Tumor
-0.2
311
Tumor
-0.2
685
Tumor
-0.2
953
Tumor
-0.2
1021
Tumor
-0.2
823
Tumor
-0.2
195
Tumor
-0.2
415
Tumor
-0.2
393
Tumor
-0.2
1045
Tumor
-0.2
785
Tumor
-0.2
741
Tumor
-0.2
975
Tumor
-0.2
131
Tumor
-0.2
922
Normal
-0.2
217
Tumor
-0.2
448
Normal
-0.3
451
Tumor
-0.3
421
Tumor
-0.3
916
Normal
-0.3
737
Tumor
-0.3
884
Normal
-0.3
425
Tumor
-0.3
743
Tumor
-0.3
661
Tumor
-0.3
926
Normal
-0.3
211
Tumor
-0.3
724
Normal
-0.3
427
Tumor
-0.3
1044
Normal
-0.3
375
Tumor
-0.3
125
Tumor
-0.3
367
Tumor
-0.3
921
Tumor
-0.3
491
Tumor
-0.3
553
Tumor
-0.3
918
Normal
-0.3
951
Tumor
-0.4
493
Tumor
-0.4
817
Tumor
-0.4
557
Tumor
-0.4
483
Tumor
-0.4
147
Tumor
-0.4
447
Tumor
-0.4
387
Tumor
-0.4
385
Tumor
-0.4
463
Tumor
-0.4
943
Tumor
-0.5
917
Tumor
-0.5
533
Tumor
-0.5
343
Tumor
-0.5
727
Tumor
-0.5
957
Tumor
-0.5
851
Tumor
-0.5
536
Normal
-0.6
573
Tumor
-0.6
1015
Tumor
-0.6
545
Tumor
-0.6
525
Tumor
-0.6
745
Tumor
-0.6
537
Tumor
-0.6
535
Tumor
-0.7
567
Tumor
-0.7
697
Tumor
-0.9
283
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
