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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IQGAP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
121.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
92.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
90.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
78.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
74.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
72.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
68.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
68.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
65.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
60.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
58.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
56.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
52.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
51.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
51.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
50.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
50.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
50.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
48.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
48.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
46.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
46.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
46.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
45.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
45.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
44.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
42.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
39.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
39.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
38.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
37.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
37.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
36.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
36.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
34.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IQGAP2 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.1
Number of samples
231
Samples
Sample
Description
TPM
DO23542
0 years, male, NA, stage:3, alive, 960 days
86.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
85.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
84.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
78.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
77.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
77.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
76.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
75.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
73.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
71.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
71.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
70.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
70.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
67.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
66.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
64.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
64.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
59.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
59.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
58.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
58.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
58.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
53.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
53.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
52.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
51.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
51.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
50.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
49.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
49.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
49.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
48.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
48.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
48.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
47.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
47.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
46.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
46.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
46.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
46.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
45.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
45.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
44.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
44.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
44.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
43.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
43.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
42.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
41.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
41.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
40.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
40.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
38.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
38.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
38.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
38.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
37.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
37.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
35.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
35.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
34.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
33.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
33.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
32.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
32.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
32.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
32.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
31.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
30.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
30.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
28.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
824
Normal
0.9
964
Normal
0.9
342
Normal
0.8
742
Normal
0.8
482
Normal
0.8
484
Normal
0.8
534
Normal
0.8
698
Normal
0.8
488
Normal
0.7
1022
Normal
0.7
481
Tumor
0.7
746
Normal
0.7
944
Normal
0.7
518
Normal
0.7
686
Normal
0.6
568
Normal
0.6
862
Normal
0.6
298
Normal
0.6
723
Tumor
0.6
714
Normal
0.6
938
Normal
0.6
462
Normal
0.6
1046
Normal
0.6
648
Normal
0.6
436
Normal
0.6
818
Normal
0.6
786
Normal
0.6
472
Normal
0.6
356
Normal
0.6
954
Normal
0.6
196
Normal
0.6
1032
Normal
0.6
426
Normal
0.6
738
Normal
0.6
618
Normal
0.6
1016
Normal
0.6
878
Normal
0.6
858
Normal
0.6
526
Normal
0.6
744
Normal
0.6
696
Normal
0.6
977
Tumor
0.6
926
Normal
0.6
636
Normal
0.6
132
Normal
0.6
448
Normal
0.6
222
Normal
0.6
162
Normal
0.6
546
Normal
0.5
414
Normal
0.5
882
Normal
0.5
922
Normal
0.5
867
Tumor
0.5
528
Normal
0.5
616
Normal
0.5
868
Normal
0.5
258
Normal
0.5
358
Normal
0.5
778
Normal
0.5
432
Normal
0.5
376
Normal
0.5
968
Normal
0.5
958
Normal
0.5
428
Normal
0.5
728
Normal
0.5
286
Normal
0.5
915
Tumor
0.5
572
Normal
0.5
864
Normal
0.5
314
Normal
0.5
982
Normal
0.5
148
Normal
0.5
554
Normal
0.5
412
Normal
0.5
422
Normal
0.5
1014
Normal
0.5
966
Normal
0.5
918
Normal
0.5
344
Normal
0.5
866
Normal
0.4
128
Normal
0.4
111
Normal
0.4
884
Normal
0.4
186
Normal
0.4
1026
Normal
0.4
716
Normal
0.4
617
Tumor
0.4
514
Normal
0.4
756
Normal
0.4
142
Normal
0.4
328
Normal
0.4
664
Normal
0.4
955
Tumor
0.4
172
Normal
0.4
332
Normal
0.4
741
Tumor
0.4
396
Normal
0.4
354
Normal
0.4
912
Normal
0.4
1028
Normal
0.4
446
Normal
0.4
456
Normal
0.4
984
Normal
0.4
952
Normal
0.4
628
Normal
0.4
464
Normal
0.4
136
Normal
0.4
474
Normal
0.4
777
Tumor
0.4
352
Normal
0.4
924
Normal
0.4
424
Normal
0.3
416
Normal
0.3
232
Normal
0.3
494
Normal
0.3
523
Tumor
0.3
976
Normal
0.3
635
Tumor
0.3
278
Normal
0.3
466
Normal
0.3
538
Normal
0.3
1044
Normal
0.3
956
Normal
0.3
228
Normal
0.3
364
Normal
0.3
218
Normal
0.3
388
Normal
0.3
816
Normal
0.3
666
Normal
0.3
914
Normal
0.3
394
Normal
0.3
1041
Tumor
0.3
715
Tumor
0.3
452
Normal
0.3
642
Normal
0.3
911
Tumor
0.3
366
Normal
0.3
171
Tumor
0.3
1042
Normal
0.3
362
Normal
0.3
212
Normal
0.2
392
Normal
0.2
368
Normal
0.2
124
Normal
0.2
261
Tumor
0.2
284
Normal
0.2
214
Normal
0.2
978
Normal
0.2
553
Tumor
0.2
574
Normal
0.2
558
Normal
0.2
564
Normal
0.2
272
Normal
0.2
415
Tumor
0.2
685
Tumor
0.2
431
Tumor
0.2
114
Normal
0.2
468
Normal
0.2
722
Normal
0.2
516
Normal
0.2
852
Normal
0.2
916
Normal
0.1
312
Normal
0.1
662
Normal
0.1
262
Normal
0.1
737
Tumor
0.1
138
Normal
0.1
1027
Tumor
0.1
527
Tumor
0.1
1045
Tumor
0.1
524
Normal
0.1
874
Normal
0.1
146
Normal
0.1
353
Tumor
0.1
451
Tumor
0.1
478
Normal
0.1
268
Normal
0.1
627
Tumor
0.0
126
Normal
0.0
857
Tumor
0.0
498
Normal
0.0
384
Normal
0.0
473
Tumor
0.0
517
Tumor
0.0
975
Tumor
0.0
492
Normal
0.0
386
Normal
0.0
513
Tumor
0.0
434
Normal
0.0
423
Tumor
-0.1
435
Tumor
-0.1
672
Normal
-0.1
963
Tumor
-0.1
365
Tumor
-0.1
937
Tumor
-0.1
981
Tumor
-0.1
112
Tumor
-0.1
224
Normal
-0.1
231
Tumor
-0.1
195
Tumor
-0.1
913
Tumor
-0.1
477
Tumor
-0.1
188
Normal
-0.1
557
Tumor
-0.2
863
Tumor
-0.2
191
Tumor
-0.2
1031
Tumor
-0.2
873
Tumor
-0.2
147
Tumor
-0.2
615
Tumor
-0.2
1025
Tumor
-0.2
695
Tumor
-0.2
536
Normal
-0.2
813
Tumor
-0.2
487
Tumor
-0.2
192
Normal
-0.2
217
Tumor
-0.2
123
Tumor
-0.2
433
Tumor
-0.2
493
Tumor
-0.2
461
Tumor
-0.2
1043
Tumor
-0.2
421
Tumor
-0.2
861
Tumor
-0.2
471
Tumor
-0.3
445
Tumor
-0.3
641
Tumor
-0.3
271
Tumor
-0.3
755
Tumor
-0.3
721
Tumor
-0.3
221
Tumor
-0.3
185
Tumor
-0.3
145
Tumor
-0.4
823
Tumor
-0.4
465
Tumor
-0.4
127
Tumor
-0.4
515
Tumor
-0.4
571
Tumor
-0.4
483
Tumor
-0.4
363
Tumor
-0.4
713
Tumor
-0.4
277
Tumor
-0.4
227
Tumor
-0.4
727
Tumor
-0.4
135
Tumor
-0.4
497
Tumor
-0.4
814
Normal
-0.4
141
Tumor
-0.4
327
Tumor
-0.4
425
Tumor
-0.4
187
Tumor
-0.4
921
Tumor
-0.4
131
Tumor
-0.4
665
Tumor
-0.4
137
Tumor
-0.4
951
Tumor
-0.5
563
Tumor
-0.5
925
Tumor
-0.5
444
Normal
-0.5
447
Tumor
-0.5
267
Tumor
-0.5
341
Tumor
-0.5
883
Tumor
-0.5
881
Tumor
-0.5
743
Tumor
-0.5
815
Tumor
-0.5
161
Tumor
-0.5
113
Tumor
-0.6
467
Tumor
-0.6
851
Tumor
-0.6
213
Tumor
-0.6
357
Tumor
-0.6
785
Tumor
-0.6
724
Normal
-0.6
427
Tumor
-0.6
443
Tumor
-0.6
361
Tumor
-0.6
865
Tumor
-0.6
943
Tumor
-0.6
745
Tumor
-0.6
393
Tumor
-0.7
413
Tumor
-0.7
533
Tumor
-0.7
455
Tumor
-0.7
663
Tumor
-0.7
285
Tumor
-0.7
383
Tumor
-0.7
463
Tumor
-0.7
817
Tumor
-0.7
877
Tumor
-0.7
1021
Tumor
-0.7
257
Tumor
-0.7
223
Tumor
-0.8
387
Tumor
-0.8
391
Tumor
-0.8
917
Tumor
-0.8
1013
Tumor
-0.8
661
Tumor
-0.9
965
Tumor
-0.9
297
Tumor
-0.9
983
Tumor
-0.9
923
Tumor
-0.9
491
Tumor
-0.9
395
Tumor
-0.9
967
Tumor
-0.9
351
Tumor
-0.9
697
Tumor
-0.9
647
Tumor
-0.9
1015
Tumor
-0.9
343
Tumor
-1.0
953
Tumor
-1.0
525
Tumor
-1.0
957
Tumor
-1.0
125
Tumor
-1.0
313
Tumor
-1.0
567
Tumor
-1.0
537
Tumor
-1.0
411
Tumor
-1.1
331
Tumor
-1.1
367
Tumor
-1.2
355
Tumor
-1.3
545
Tumor
-1.3
375
Tumor
-1.4
573
Tumor
-1.4
311
Tumor
-1.5
671
Tumor
-1.6
211
Tumor
-1.7
385
Tumor
-1.7
283
Tumor
-1.8
535
Tumor
-1.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.