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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRD5A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRD5A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.7
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
98.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
65.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
56.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
52.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
51.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
48.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
46.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
46.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
44.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
39.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
34.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
32.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
31.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
358
Normal
1.9
388
Normal
1.6
452
Normal
1.5
332
Normal
1.5
344
Normal
1.5
138
Normal
1.4
568
Normal
1.4
278
Normal
1.4
744
Normal
1.4
878
Normal
1.4
534
Normal
1.4
636
Normal
1.4
232
Normal
1.3
394
Normal
1.3
432
Normal
1.3
954
Normal
1.3
396
Normal
1.2
884
Normal
1.2
354
Normal
1.2
852
Normal
1.2
342
Normal
1.2
538
Normal
1.2
356
Normal
1.1
882
Normal
1.1
574
Normal
1.1
728
Normal
1.1
222
Normal
1.1
564
Normal
1.1
944
Normal
1.1
468
Normal
1.1
298
Normal
1.0
142
Normal
1.0
128
Normal
1.0
352
Normal
1.0
864
Normal
1.0
938
Normal
1.0
466
Normal
1.0
422
Normal
1.0
862
Normal
1.0
314
Normal
1.0
627
Tumor
1.0
558
Normal
1.0
414
Normal
1.0
196
Normal
0.9
723
Tumor
0.9
672
Normal
0.9
628
Normal
0.9
642
Normal
0.9
124
Normal
0.9
186
Normal
0.9
412
Normal
0.9
662
Normal
0.9
464
Normal
0.9
528
Normal
0.9
214
Normal
0.9
1026
Normal
0.8
436
Normal
0.8
618
Normal
0.8
386
Normal
0.8
756
Normal
0.8
434
Normal
0.8
272
Normal
0.8
392
Normal
0.8
924
Normal
0.8
361
Tumor
0.8
368
Normal
0.8
716
Normal
0.8
258
Normal
0.8
126
Normal
0.8
456
Normal
0.7
172
Normal
0.7
696
Normal
0.7
616
Normal
0.7
114
Normal
0.7
328
Normal
0.7
218
Normal
0.7
698
Normal
0.7
976
Normal
0.7
1032
Normal
0.7
686
Normal
0.7
984
Normal
0.7
426
Normal
0.7
912
Normal
0.7
858
Normal
0.7
111
Normal
0.7
488
Normal
0.7
446
Normal
0.7
416
Normal
0.6
554
Normal
0.6
866
Normal
0.6
648
Normal
0.6
742
Normal
0.6
518
Normal
0.6
546
Normal
0.6
786
Normal
0.6
1014
Normal
0.6
956
Normal
0.6
428
Normal
0.6
1016
Normal
0.6
914
Normal
0.6
572
Normal
0.6
922
Normal
0.5
958
Normal
0.5
816
Normal
0.5
874
Normal
0.5
818
Normal
0.5
966
Normal
0.5
362
Normal
0.5
376
Normal
0.5
492
Normal
0.5
1046
Normal
0.5
312
Normal
0.4
366
Normal
0.4
978
Normal
0.4
964
Normal
0.4
1028
Normal
0.4
664
Normal
0.4
1022
Normal
0.4
982
Normal
0.4
448
Normal
0.4
353
Tumor
0.4
498
Normal
0.4
868
Normal
0.3
952
Normal
0.3
738
Normal
0.3
424
Normal
0.3
722
Normal
0.3
955
Tumor
0.3
444
Normal
0.3
824
Normal
0.3
666
Normal
0.3
785
Tumor
0.3
224
Normal
0.3
1027
Tumor
0.3
746
Normal
0.2
188
Normal
0.2
1042
Normal
0.2
714
Normal
0.2
146
Normal
0.2
484
Normal
0.2
132
Normal
0.2
384
Normal
0.2
968
Normal
0.2
1044
Normal
0.2
327
Tumor
0.2
563
Tumor
0.2
494
Normal
0.2
148
Normal
0.2
755
Tumor
0.2
286
Normal
0.1
423
Tumor
0.1
262
Normal
0.1
857
Tumor
0.1
926
Normal
0.1
918
Normal
0.1
136
Normal
0.1
615
Tumor
0.0
462
Normal
0.0
192
Normal
0.0
357
Tumor
0.0
217
Tumor
0.0
162
Normal
0.0
916
Normal
-0.1
557
Tumor
-0.1
228
Normal
-0.1
1045
Tumor
-0.1
268
Normal
-0.1
445
Tumor
-0.1
937
Tumor
-0.1
343
Tumor
-0.1
212
Normal
-0.1
526
Normal
-0.1
391
Tumor
-0.2
435
Tumor
-0.2
145
Tumor
-0.2
461
Tumor
-0.2
867
Tumor
-0.2
981
Tumor
-0.2
778
Normal
-0.2
536
Normal
-0.3
284
Normal
-0.3
415
Tumor
-0.3
514
Normal
-0.3
571
Tumor
-0.3
393
Tumor
-0.3
195
Tumor
-0.3
364
Normal
-0.3
943
Tumor
-0.3
451
Tumor
-0.4
365
Tumor
-0.4
447
Tumor
-0.4
1015
Tumor
-0.4
513
Tumor
-0.4
685
Tumor
-0.4
433
Tumor
-0.4
341
Tumor
-0.4
187
Tumor
-0.5
431
Tumor
-0.5
915
Tumor
-0.5
387
Tumor
-0.5
421
Tumor
-0.5
524
Normal
-0.5
443
Tumor
-0.5
465
Tumor
-0.5
467
Tumor
-0.5
261
Tumor
-0.5
873
Tumor
-0.5
641
Tumor
-0.5
721
Tumor
-0.6
515
Tumor
-0.6
814
Normal
-0.6
635
Tumor
-0.6
567
Tumor
-0.6
483
Tumor
-0.6
395
Tumor
-0.7
977
Tumor
-0.7
983
Tumor
-0.7
455
Tumor
-0.7
533
Tumor
-0.7
191
Tumor
-0.7
161
Tumor
-0.7
1013
Tumor
-0.7
861
Tumor
-0.8
137
Tumor
-0.8
482
Normal
-0.8
463
Tumor
-0.8
427
Tumor
-0.8
545
Tumor
-0.8
535
Tumor
-0.8
573
Tumor
-0.8
491
Tumor
-0.8
617
Tumor
-0.9
267
Tumor
-0.9
813
Tumor
-0.9
385
Tumor
-0.9
1043
Tumor
-0.9
516
Normal
-0.9
411
Tumor
-0.9
537
Tumor
-0.9
481
Tumor
-0.9
953
Tumor
-1.0
665
Tumor
-1.0
413
Tumor
-1.0
553
Tumor
-1.0
913
Tumor
-1.0
478
Normal
-1.0
713
Tumor
-1.0
881
Tumor
-1.0
525
Tumor
-1.0
474
Normal
-1.0
697
Tumor
-1.0
351
Tumor
-1.1
185
Tumor
-1.1
671
Tumor
-1.1
883
Tumor
-1.1
661
Tumor
-1.1
375
Tumor
-1.1
777
Tumor
-1.1
211
Tumor
-1.1
917
Tumor
-1.2
472
Normal
-1.2
527
Tumor
-1.2
517
Tumor
-1.2
487
Tumor
-1.2
647
Tumor
-1.2
213
Tumor
-1.2
957
Tumor
-1.2
715
Tumor
-1.2
963
Tumor
-1.3
823
Tumor
-1.3
863
Tumor
-1.3
221
Tumor
-1.3
141
Tumor
-1.3
383
Tumor
-1.3
1021
Tumor
-1.3
695
Tumor
-1.3
1041
Tumor
-1.3
283
Tumor
-1.3
663
Tumor
-1.3
493
Tumor
-1.4
425
Tumor
-1.4
223
Tumor
-1.4
975
Tumor
-1.4
257
Tumor
-1.4
355
Tumor
-1.4
865
Tumor
-1.4
311
Tumor
-1.4
497
Tumor
-1.4
367
Tumor
-1.5
921
Tumor
-1.5
113
Tumor
-1.5
741
Tumor
-1.5
127
Tumor
-1.6
285
Tumor
-1.6
925
Tumor
-1.6
923
Tumor
-1.6
911
Tumor
-1.6
227
Tumor
-1.6
297
Tumor
-1.7
363
Tumor
-1.7
745
Tumor
-1.7
171
Tumor
-1.7
1025
Tumor
-1.8
123
Tumor
-1.8
1031
Tumor
-1.8
877
Tumor
-1.8
471
Tumor
-1.8
951
Tumor
-1.8
271
Tumor
-1.8
523
Tumor
-1.8
851
Tumor
-1.8
727
Tumor
-1.8
815
Tumor
-1.9
737
Tumor
-1.9
965
Tumor
-1.9
967
Tumor
-2.0
817
Tumor
-2.0
724
Normal
-2.1
331
Tumor
-2.1
231
Tumor
-2.1
277
Tumor
-2.1
313
Tumor
-2.1
147
Tumor
-2.1
112
Tumor
-2.2
125
Tumor
-2.3
477
Tumor
-2.4
135
Tumor
-2.5
743
Tumor
-2.5
131
Tumor
-2.5
473
Tumor
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
