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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYP4V2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
98.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
73.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
58.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
40.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
35.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYP4V2 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.8
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
105.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
78.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
73.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
70.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
63.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
63.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
62.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
60.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
59.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
59.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
54.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
53.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
52.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
51.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
49.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
48.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
48.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
48.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
47.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
47.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
46.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
45.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
45.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
45.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
42.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
42.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
41.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
40.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
40.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
39.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
39.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
38.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
36.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
36.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
34.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
34.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
33.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
32.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
31.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
30.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
132
Normal
1.8
615
Tumor
1.6
222
Normal
1.5
618
Normal
1.4
727
Tumor
1.3
342
Normal
1.3
914
Normal
1.3
746
Normal
1.2
481
Tumor
1.2
436
Normal
1.1
926
Normal
1.1
964
Normal
1.1
366
Normal
1.1
422
Normal
1.1
824
Normal
1.1
142
Normal
1.1
1022
Normal
1.1
314
Normal
1.0
714
Normal
1.0
414
Normal
1.0
976
Normal
1.0
648
Normal
1.0
922
Normal
1.0
286
Normal
1.0
642
Normal
0.9
938
Normal
0.9
356
Normal
0.9
278
Normal
0.9
464
Normal
0.9
114
Normal
0.9
534
Normal
0.9
416
Normal
0.9
482
Normal
0.9
365
Tumor
0.9
968
Normal
0.9
188
Normal
0.8
568
Normal
0.8
446
Normal
0.8
954
Normal
0.8
723
Tumor
0.8
864
Normal
0.8
728
Normal
0.8
696
Normal
0.8
1042
Normal
0.8
423
Tumor
0.7
124
Normal
0.7
426
Normal
0.7
388
Normal
0.7
128
Normal
0.7
492
Normal
0.7
866
Normal
0.7
272
Normal
0.7
428
Normal
0.7
172
Normal
0.7
268
Normal
0.7
332
Normal
0.6
627
Tumor
0.6
1014
Normal
0.6
664
Normal
0.6
494
Normal
0.6
432
Normal
0.6
228
Normal
0.6
344
Normal
0.6
214
Normal
0.6
358
Normal
0.6
452
Normal
0.6
738
Normal
0.6
196
Normal
0.6
424
Normal
0.6
445
Tumor
0.6
462
Normal
0.6
328
Normal
0.6
258
Normal
0.6
456
Normal
0.6
1026
Normal
0.6
858
Normal
0.6
528
Normal
0.6
884
Normal
0.6
916
Normal
0.5
472
Normal
0.5
484
Normal
0.5
516
Normal
0.5
376
Normal
0.5
628
Normal
0.5
1028
Normal
0.5
474
Normal
0.5
616
Normal
0.5
952
Normal
0.5
1016
Normal
0.5
1046
Normal
0.5
982
Normal
0.5
958
Normal
0.5
162
Normal
0.5
498
Normal
0.5
636
Normal
0.5
744
Normal
0.4
882
Normal
0.4
362
Normal
0.4
1044
Normal
0.4
126
Normal
0.4
918
Normal
0.4
396
Normal
0.4
742
Normal
0.4
354
Normal
0.4
444
Normal
0.4
341
Tumor
0.4
466
Normal
0.4
912
Normal
0.4
412
Normal
0.4
477
Tumor
0.4
564
Normal
0.3
284
Normal
0.3
148
Normal
0.3
978
Normal
0.3
468
Normal
0.3
221
Tumor
0.3
722
Normal
0.3
232
Normal
0.3
572
Normal
0.3
392
Normal
0.3
538
Normal
0.3
384
Normal
0.3
415
Tumor
0.3
136
Normal
0.3
955
Tumor
0.2
558
Normal
0.2
478
Normal
0.2
312
Normal
0.2
212
Normal
0.2
187
Tumor
0.2
915
Tumor
0.2
862
Normal
0.2
298
Normal
0.2
786
Normal
0.2
386
Normal
0.2
327
Tumor
0.2
271
Tumor
0.1
686
Normal
0.1
138
Normal
0.1
1045
Tumor
0.1
364
Normal
0.1
546
Normal
0.1
192
Normal
0.1
672
Normal
0.1
262
Normal
0.1
878
Normal
0.1
713
Tumor
0.1
1032
Normal
0.1
984
Normal
0.1
443
Tumor
0.0
745
Tumor
0.0
944
Normal
0.0
874
Normal
0.0
394
Normal
0.0
868
Normal
0.0
526
Normal
0.0
662
Normal
0.0
361
Tumor
0.0
716
Normal
0.0
518
Normal
0.0
981
Tumor
0.0
641
Tumor
-0.1
921
Tumor
-0.1
924
Normal
-0.1
448
Normal
-0.1
666
Normal
-0.1
111
Normal
-0.1
852
Normal
-0.1
956
Normal
-0.1
186
Normal
-0.1
574
Normal
-0.1
818
Normal
-0.1
966
Normal
-0.1
146
Normal
-0.1
411
Tumor
-0.1
911
Tumor
-0.1
737
Tumor
-0.1
913
Tumor
-0.2
963
Tumor
-0.2
695
Tumor
-0.2
975
Tumor
-0.2
617
Tumor
-0.2
554
Normal
-0.2
218
Normal
-0.2
227
Tumor
-0.3
756
Normal
-0.3
137
Tumor
-0.3
785
Tumor
-0.3
721
Tumor
-0.3
491
Tumor
-0.3
353
Tumor
-0.3
488
Normal
-0.3
514
Normal
-0.3
224
Normal
-0.3
383
Tumor
-0.3
352
Normal
-0.3
434
Normal
-0.3
778
Normal
-0.3
147
Tumor
-0.4
421
Tumor
-0.4
663
Tumor
-0.4
823
Tumor
-0.4
524
Normal
-0.4
647
Tumor
-0.4
141
Tumor
-0.4
195
Tumor
-0.4
368
Normal
-0.4
515
Tumor
-0.5
355
Tumor
-0.5
113
Tumor
-0.5
863
Tumor
-0.5
814
Normal
-0.5
1021
Tumor
-0.5
777
Tumor
-0.5
857
Tumor
-0.5
461
Tumor
-0.5
1027
Tumor
-0.5
527
Tumor
-0.6
213
Tumor
-0.6
191
Tumor
-0.6
1015
Tumor
-0.6
161
Tumor
-0.6
277
Tumor
-0.6
533
Tumor
-0.6
741
Tumor
-0.6
413
Tumor
-0.6
937
Tumor
-0.6
145
Tumor
-0.6
431
Tumor
-0.6
867
Tumor
-0.7
1041
Tumor
-0.7
471
Tumor
-0.7
363
Tumor
-0.7
977
Tumor
-0.7
463
Tumor
-0.7
816
Normal
-0.7
257
Tumor
-0.7
724
Normal
-0.7
465
Tumor
-0.7
1043
Tumor
-0.7
217
Tumor
-0.7
571
Tumor
-0.8
553
Tumor
-0.8
873
Tumor
-0.8
813
Tumor
-0.8
261
Tumor
-0.8
685
Tumor
-0.8
427
Tumor
-0.8
393
Tumor
-0.9
881
Tumor
-0.9
455
Tumor
-0.9
433
Tumor
-0.9
112
Tumor
-0.9
698
Normal
-0.9
493
Tumor
-0.9
967
Tumor
-0.9
357
Tumor
-0.9
563
Tumor
-0.9
425
Tumor
-0.9
883
Tumor
-0.9
171
Tumor
-0.9
451
Tumor
-0.9
523
Tumor
-0.9
925
Tumor
-1.0
953
Tumor
-1.0
473
Tumor
-1.0
635
Tumor
-1.0
483
Tumor
-1.0
557
Tumor
-1.0
467
Tumor
-1.0
943
Tumor
-1.0
131
Tumor
-1.1
917
Tumor
-1.1
435
Tumor
-1.1
127
Tumor
-1.1
185
Tumor
-1.1
267
Tumor
-1.1
343
Tumor
-1.1
487
Tumor
-1.1
957
Tumor
-1.1
671
Tumor
-1.1
123
Tumor
-1.1
497
Tumor
-1.1
513
Tumor
-1.1
395
Tumor
-1.2
755
Tumor
-1.2
447
Tumor
-1.2
536
Normal
-1.3
331
Tumor
-1.3
223
Tumor
-1.3
923
Tumor
-1.3
125
Tumor
-1.3
297
Tumor
-1.3
135
Tumor
-1.4
567
Tumor
-1.4
715
Tumor
-1.4
375
Tumor
-1.4
1031
Tumor
-1.4
517
Tumor
-1.5
311
Tumor
-1.5
231
Tumor
-1.5
951
Tumor
-1.5
983
Tumor
-1.5
817
Tumor
-1.5
573
Tumor
-1.5
313
Tumor
-1.5
1025
Tumor
-1.5
391
Tumor
-1.6
665
Tumor
-1.6
367
Tumor
-1.6
545
Tumor
-1.6
661
Tumor
-1.6
1013
Tumor
-1.6
537
Tumor
-1.6
211
Tumor
-1.6
861
Tumor
-1.7
285
Tumor
-1.7
851
Tumor
-1.7
743
Tumor
-1.7
877
Tumor
-1.7
525
Tumor
-1.8
351
Tumor
-1.8
387
Tumor
-1.8
865
Tumor
-1.8
385
Tumor
-1.8
965
Tumor
-1.9
283
Tumor
-1.9
815
Tumor
-1.9
697
Tumor
-2.1
535
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
