MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.7 nTPM
HPA Brain:31.9 nTPM
GTEx:5.7 nTPM
FANTOM5:12.5 Scaled Tags Per Million
Pig:36.2 nTPM
Mouse:60.0 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.4
2019 Male, age 18, unknown 38.2
1827 Male, age 72, unknown 25.8
2666 Male, age 74, left hemisphere 23.7
2828 Female, age 72, unknown 21.6
2411 Female, age 72, unknown 21.5
2219 Male, age 76, both hemispheres 19.9
2586 Male, age 75, left hemisphere 19.5
1833 Male, age 53, unknown 19.0
1830 Male, age 51, unknown 18.6
1870 Female, age 42, unknown 16.7
Dorsal raphe nucleus
nTPM: 20.8
2298 Female, age 72, unknown 24.0
1828 Male, age 53, unknown 23.8
2750 Male, age 76, both hemispheres 20.3
2047 Male, age 72, unknown 19.7
2016 Female, age 72, unknown 16.1
Inferior colliculus
nTPM: 28.1
2097 Female, age 72, unknown 37.8
1848 Female, age 42, unknown 27.7
1890 Male, age 53, unknown 25.9
2849 Male, age 72, unknown 20.9
Median raphe nucleus
nTPM: 22.3
2220 Male, age 76, midline 22.3
Periaquaductal grey, anterior
nTPM: 24.0
1795 Male, age 51, unknown 24.8
1947 Male, age 18, unknown 24.8
2502 Female, age 75, unknown 22.5
Periaquaductal grey, dorsal
nTPM: 18.7
1840 Male, age 53, unknown 19.5
1831 Male, age 72, unknown 18.9
2464 Female, age 72, unknown 18.7
2850 Male, age 76, both hemispheres 17.5
Periaquaductal grey, lateral
nTPM: 18.6
2272 Male, age 74, both hemispheres 21.6
2053 Male, age 18, unknown 17.3
2140 Male, age 76, both hemispheres 16.8
Pretectal area
nTPM: 31.9
1817 Female, age 42, unknown 54.3
2007 Male, age 72, unknown 47.7
1944 Female, age 72, unknown 46.1
1816 Male, age 51, unknown 44.8
1815 Male, age 53, unknown 34.4
2667 Female, age 75, unknown 28.0
2224 Female, age 72, unknown 22.7
2273 Male, age 74, both hemispheres 22.4
2316 Male, age 76, right hemisphere 18.3
2407 Male, age 75, both hemispheres 16.5
2825 Male, age 18, unknown 16.0
Red nucleus
nTPM: 20.5
2785 Male, age 18, unknown 31.7
1821 Female, age 72, unknown 24.3
2823 Male, age 76, right hemisphere 20.8
2725 Female, age 75, unknown 20.7
1954 Female, age 42, unknown 20.2
2503 Female, age 72, unknown 19.5
2227 Male, age 72, unknown 19.1
1865 Male, age 51, unknown 18.6
2769 Male, age 72, unknown 18.6
2588 Male, age 74, left hemisphere 18.4
2584 Male, age 75, left hemisphere 17.5
1904 Male, age 53, unknown 16.8
Substantia nigra
nTPM: 25.5
1889 Female, age 72, unknown 40.5
1941 Male, age 53, unknown 33.5
2409 Female, age 72, unknown 28.4
1916 Female, age 42, unknown 26.8
1851 Male, age 51, unknown 25.8
2665 Male, age 74, both hemispheres 25.3
2241 Male, age 72, unknown 21.6
2590 Female, age 75, unknown 21.3
2583 Male, age 75, right hemisphere 17.3
2699 Male, age 18, unknown 14.6
Superior colliculus
nTPM: 25.0
2087 Female, age 72, unknown 39.7
2668 Female, age 75, unknown 30.5
2261 Male, age 18, unknown 27.8
1895 Male, age 76, right hemisphere 27.0
1796 Male, age 53, unknown 24.6
1995 Male, age 72, unknown 22.2
1839 Male, age 51, unknown 20.5
2587 Male, age 74, left hemisphere 19.5
1913 Female, age 42, unknown 19.3
2664 Male, age 75, both hemispheres 18.7
Ventral tegmental area
nTPM: 21.5
2410 Female, age 72, unknown 29.5
2218 Male, age 76, both hemispheres 23.9
1915 Female, age 42, unknown 22.4
1942 Male, age 51, unknown 19.1
2223 Female, age 72, unknown 18.8
2021 Male, age 53, unknown 15.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.7
Samples: 139

Max nTPM: 31.8
Min nTPM: 0.9
Std nTPM: 4.0
Median nTPM: 4.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 21.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 19.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 14.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 13.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 11.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 11.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 10.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 10.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 10.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 10.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.5
FF:10158-103A5 76 years, female 12.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.7
Samples: 4

Max nTPM: 37.3
Min nTPM: 20.0
Sample A Female 35.5
Sample B Female 26.0
Sample C Male 37.3
Sample D Male 20.0
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 42.2
Min nTPM: 23.1
Sample A Female 23.1
Sample B Female 29.7
Sample C Male 42.2
Sample D Male 30.9
Periaqueductal gray
nTPM: 32.2
Samples: 3

Max nTPM: 34.6
Min nTPM: 29.6
Sample B Female 32.3
Sample C Male 34.6
Sample D Male 29.6
Superior colliculi
nTPM: 36.2
Samples: 4

Max nTPM: 53.7
Min nTPM: 24.2
Sample A Female 32.5
Sample B Female 24.2
Sample C Male 53.7
Sample D Male 34.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 60.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.0
Samples: 4

Max nTPM: 65.3
Min nTPM: 54.3
Sample A Male 54.3
Sample B Male 60.7
Sample C Female 65.3
Sample D Female 59.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
74881744 Antisense, RP_060315_04_D02, Mouse strain C57BL/6J (56 days, male) 4.1
69527770 Antisense, RP_050421_02_D07, Mouse strain C57BL/6J (56 days, male) 2.5

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