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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF2A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
128.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
103.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
89.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
86.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
78.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
73.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
73.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
73.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
72.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
64.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
64.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
64.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
63.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
62.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
60.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
60.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
60.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
58.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
56.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
55.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
55.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
54.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
54.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
54.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
54.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
53.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
52.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
50.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
50.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
50.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
49.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
49.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
49.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
49.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
49.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
48.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
48.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
48.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
47.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
47.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
46.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
45.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
45.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
44.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
44.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
42.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
42.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
42.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
41.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
41.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
41.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
40.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
40.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
39.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
39.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
39.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
38.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
38.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
38.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
38.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
36.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
35.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
35.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
35.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
35.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
34.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
32.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
32.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
31.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
30.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
29.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
26.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF2A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.6
Number of samples
231
Samples
Sample
Description
TPM
DO45163
0 years, male, NA, stage:2, alive, 960 days
53.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
50.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
44.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
41.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
40.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
38.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
37.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
34.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
33.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
28.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
983
Tumor
1.2
663
Tumor
0.9
925
Tumor
0.8
112
Tumor
0.8
227
Tumor
0.8
865
Tumor
0.7
537
Tumor
0.7
951
Tumor
0.7
525
Tumor
0.6
567
Tumor
0.6
921
Tumor
0.6
1021
Tumor
0.6
367
Tumor
0.6
411
Tumor
0.6
443
Tumor
0.6
497
Tumor
0.6
135
Tumor
0.6
777
Tumor
0.5
815
Tumor
0.5
493
Tumor
0.5
535
Tumor
0.5
1041
Tumor
0.5
957
Tumor
0.5
477
Tumor
0.5
877
Tumor
0.5
863
Tumor
0.5
937
Tumor
0.5
883
Tumor
0.4
471
Tumor
0.4
473
Tumor
0.4
563
Tumor
0.4
395
Tumor
0.4
727
Tumor
0.4
1027
Tumor
0.4
573
Tumor
0.4
724
Normal
0.4
533
Tumor
0.4
421
Tumor
0.4
327
Tumor
0.4
1025
Tumor
0.4
363
Tumor
0.4
965
Tumor
0.4
743
Tumor
0.4
387
Tumor
0.4
425
Tumor
0.4
915
Tumor
0.3
223
Tumor
0.3
187
Tumor
0.3
1015
Tumor
0.3
913
Tumor
0.3
513
Tumor
0.3
851
Tumor
0.3
427
Tumor
0.3
517
Tumor
0.3
351
Tumor
0.3
357
Tumor
0.3
685
Tumor
0.3
817
Tumor
0.3
311
Tumor
0.3
171
Tumor
0.3
963
Tumor
0.3
953
Tumor
0.2
823
Tumor
0.2
745
Tumor
0.2
967
Tumor
0.2
861
Tumor
0.2
483
Tumor
0.2
413
Tumor
0.2
697
Tumor
0.2
145
Tumor
0.2
353
Tumor
0.2
515
Tumor
0.2
283
Tumor
0.2
161
Tumor
0.2
737
Tumor
0.2
661
Tumor
0.2
943
Tumor
0.2
715
Tumor
0.2
873
Tumor
0.2
557
Tumor
0.2
617
Tumor
0.2
257
Tumor
0.2
665
Tumor
0.2
211
Tumor
0.2
981
Tumor
0.2
147
Tumor
0.2
231
Tumor
0.1
523
Tumor
0.1
431
Tumor
0.1
393
Tumor
0.1
867
Tumor
0.1
127
Tumor
0.1
221
Tumor
0.1
741
Tumor
0.1
365
Tumor
0.1
451
Tumor
0.1
385
Tumor
0.1
755
Tumor
0.1
271
Tumor
0.1
467
Tumor
0.1
375
Tumor
0.1
131
Tumor
0.1
185
Tumor
0.1
481
Tumor
0.1
671
Tumor
0.1
415
Tumor
0.1
285
Tumor
0.1
331
Tumor
0.1
355
Tumor
0.1
713
Tumor
0.1
141
Tumor
0.1
1031
Tumor
0.1
361
Tumor
0.1
545
Tumor
0.1
137
Tumor
0.1
615
Tumor
0.1
461
Tumor
0.0
1013
Tumor
0.0
923
Tumor
0.0
113
Tumor
0.0
955
Tumor
0.0
977
Tumor
0.0
191
Tumor
0.0
123
Tumor
0.0
297
Tumor
0.0
343
Tumor
0.0
435
Tumor
0.0
487
Tumor
0.0
447
Tumor
0.0
926
Normal
0.0
1026
Normal
0.0
514
Normal
0.0
267
Tumor
0.0
213
Tumor
0.0
455
Tumor
0.0
721
Tumor
0.0
944
Normal
0.0
195
Tumor
0.0
313
Tumor
0.0
261
Tumor
0.0
918
Normal
0.0
641
Tumor
0.0
148
Normal
0.0
391
Tumor
0.0
964
Normal
0.0
911
Tumor
-0.1
978
Normal
-0.1
647
Tumor
-0.1
618
Normal
-0.1
527
Tumor
-0.1
186
Normal
-0.1
356
Normal
-0.1
966
Normal
-0.1
917
Tumor
-0.1
428
Normal
-0.1
412
Normal
-0.1
172
Normal
-0.1
813
Tumor
-0.1
864
Normal
-0.1
814
Normal
-0.1
484
Normal
-0.1
824
Normal
-0.1
422
Normal
-0.1
416
Normal
-0.1
474
Normal
-0.1
277
Tumor
-0.1
975
Tumor
-0.1
696
Normal
-0.1
666
Normal
-0.1
1042
Normal
-0.1
534
Normal
-0.1
212
Normal
-0.1
628
Normal
-0.1
818
Normal
-0.1
553
Tumor
-0.1
524
Normal
-0.1
636
Normal
-0.1
462
Normal
-0.1
916
Normal
-0.1
383
Tumor
-0.1
526
Normal
-0.1
786
Normal
-0.1
924
Normal
-0.1
976
Normal
-0.1
286
Normal
-0.1
446
Normal
-0.1
738
Normal
-0.1
648
Normal
-0.1
914
Normal
-0.1
1016
Normal
-0.1
482
Normal
-0.1
642
Normal
-0.1
228
Normal
-0.1
516
Normal
-0.1
188
Normal
-0.1
1014
Normal
-0.1
162
Normal
-0.1
852
Normal
-0.1
664
Normal
-0.1
284
Normal
-0.1
546
Normal
-0.1
1022
Normal
-0.1
388
Normal
-0.1
125
Tumor
-0.1
952
Normal
-0.1
328
Normal
-0.1
332
Normal
-0.1
938
Normal
-0.1
491
Tumor
-0.1
572
Normal
-0.1
662
Normal
-0.1
494
Normal
-0.1
488
Normal
-0.1
922
Normal
-0.1
866
Normal
-0.1
722
Normal
-0.1
268
Normal
-0.1
968
Normal
-0.1
463
Tumor
-0.2
571
Tumor
-0.2
465
Tumor
-0.2
423
Tumor
-0.2
224
Normal
-0.2
433
Tumor
-0.2
278
Normal
-0.2
126
Normal
-0.2
714
Normal
-0.2
312
Normal
-0.2
912
Normal
-0.2
364
Normal
-0.2
728
Normal
-0.2
314
Normal
-0.2
564
Normal
-0.2
386
Normal
-0.2
448
Normal
-0.2
816
Normal
-0.2
616
Normal
-0.2
874
Normal
-0.2
492
Normal
-0.2
868
Normal
-0.2
518
Normal
-0.2
472
Normal
-0.2
882
Normal
-0.2
858
Normal
-0.2
1045
Tumor
-0.2
424
Normal
-0.2
956
Normal
-0.2
723
Tumor
-0.2
627
Tumor
-0.2
958
Normal
-0.2
444
Normal
-0.2
262
Normal
-0.2
528
Normal
-0.2
136
Normal
-0.2
114
Normal
-0.2
272
Normal
-0.2
1032
Normal
-0.2
466
Normal
-0.2
362
Normal
-0.2
132
Normal
-0.2
857
Tumor
-0.2
1028
Normal
-0.2
982
Normal
-0.2
756
Normal
-0.2
414
Normal
-0.2
128
Normal
-0.2
862
Normal
-0.2
436
Normal
-0.2
232
Normal
-0.2
1043
Tumor
-0.2
376
Normal
-0.2
138
Normal
-0.2
434
Normal
-0.2
142
Normal
-0.2
498
Normal
-0.2
426
Normal
-0.2
1044
Normal
-0.2
396
Normal
-0.2
392
Normal
-0.2
746
Normal
-0.2
536
Normal
-0.2
884
Normal
-0.2
1046
Normal
-0.2
778
Normal
-0.2
341
Tumor
-0.2
394
Normal
-0.2
445
Tumor
-0.2
258
Normal
-0.2
672
Normal
-0.2
298
Normal
-0.2
111
Normal
-0.2
698
Normal
-0.2
742
Normal
-0.3
196
Normal
-0.3
478
Normal
-0.3
146
Normal
-0.3
878
Normal
-0.3
384
Normal
-0.3
695
Tumor
-0.3
568
Normal
-0.3
558
Normal
-0.3
984
Normal
-0.3
192
Normal
-0.3
716
Normal
-0.3
574
Normal
-0.3
881
Tumor
-0.3
432
Normal
-0.3
217
Tumor
-0.3
554
Normal
-0.3
354
Normal
-0.3
214
Normal
-0.3
358
Normal
-0.3
468
Normal
-0.3
352
Normal
-0.3
686
Normal
-0.3
635
Tumor
-0.3
124
Normal
-0.3
954
Normal
-0.3
366
Normal
-0.3
785
Tumor
-0.3
456
Normal
-0.4
464
Normal
-0.4
222
Normal
-0.4
538
Normal
-0.4
368
Normal
-0.4
342
Normal
-0.5
744
Normal
-0.5
344
Normal
-0.5
218
Normal
-0.5
452
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
