MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:27.1 nTPM
GTEx:19.2 nTPM
FANTOM5:52.4 Scaled Tags Per Million
Pig:61.9 nTPM
Mouse:30.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.1
2411 Female, age 72, unknown 24.9
2019 Male, age 18, unknown 24.8
2219 Male, age 76, both hemispheres 24.1
1870 Female, age 42, unknown 23.9
1830 Male, age 51, unknown 23.6
1833 Male, age 53, unknown 22.8
1827 Male, age 72, unknown 22.6
2666 Male, age 74, left hemisphere 20.9
2828 Female, age 72, unknown 19.3
2586 Male, age 75, left hemisphere 13.6
Dorsal raphe nucleus
nTPM: 24.3
2750 Male, age 76, both hemispheres 26.7
1828 Male, age 53, unknown 24.8
2298 Female, age 72, unknown 24.3
2047 Male, age 72, unknown 23.3
2016 Female, age 72, unknown 22.6
Inferior colliculus
nTPM: 27.1
2097 Female, age 72, unknown 28.3
1848 Female, age 42, unknown 27.6
1890 Male, age 53, unknown 27.5
2849 Male, age 72, unknown 25.1
Median raphe nucleus
nTPM: 25.5
2220 Male, age 76, midline 25.5
Periaquaductal grey, anterior
nTPM: 26.0
1947 Male, age 18, unknown 28.6
2502 Female, age 75, unknown 27.4
1795 Male, age 51, unknown 22.1
Periaquaductal grey, dorsal
nTPM: 23.1
2850 Male, age 76, both hemispheres 25.9
1831 Male, age 72, unknown 23.0
1840 Male, age 53, unknown 22.0
2464 Female, age 72, unknown 21.7
Periaquaductal grey, lateral
nTPM: 24.7
2272 Male, age 74, both hemispheres 27.9
2053 Male, age 18, unknown 23.3
2140 Male, age 76, both hemispheres 22.8
Pretectal area
nTPM: 26.2
1816 Male, age 51, unknown 29.1
2316 Male, age 76, right hemisphere 28.2
2273 Male, age 74, both hemispheres 27.9
2007 Male, age 72, unknown 27.7
2667 Female, age 75, unknown 26.5
1815 Male, age 53, unknown 26.2
1817 Female, age 42, unknown 26.0
1944 Female, age 72, unknown 25.1
2224 Female, age 72, unknown 24.9
2825 Male, age 18, unknown 24.0
2407 Male, age 75, both hemispheres 22.6
Red nucleus
nTPM: 25.4
1821 Female, age 72, unknown 34.5
1865 Male, age 51, unknown 27.0
2503 Female, age 72, unknown 27.0
2725 Female, age 75, unknown 26.9
1954 Female, age 42, unknown 26.1
1904 Male, age 53, unknown 25.3
2785 Male, age 18, unknown 25.2
2227 Male, age 72, unknown 24.4
2769 Male, age 72, unknown 24.1
2823 Male, age 76, right hemisphere 23.8
2588 Male, age 74, left hemisphere 21.0
2584 Male, age 75, left hemisphere 20.0
Substantia nigra
nTPM: 24.1
2241 Male, age 72, unknown 28.0
1889 Female, age 72, unknown 26.9
1916 Female, age 42, unknown 26.6
2409 Female, age 72, unknown 26.4
1851 Male, age 51, unknown 24.1
1941 Male, age 53, unknown 22.9
2583 Male, age 75, right hemisphere 22.2
2665 Male, age 74, both hemispheres 22.0
2590 Female, age 75, unknown 21.9
2699 Male, age 18, unknown 20.0
Superior colliculus
nTPM: 24.3
2587 Male, age 74, left hemisphere 29.5
1895 Male, age 76, right hemisphere 26.7
2261 Male, age 18, unknown 26.2
1839 Male, age 51, unknown 25.1
1796 Male, age 53, unknown 24.9
2087 Female, age 72, unknown 23.3
1913 Female, age 42, unknown 22.9
1995 Male, age 72, unknown 22.9
2668 Female, age 75, unknown 22.9
2664 Male, age 75, both hemispheres 17.8
Ventral tegmental area
nTPM: 23.4
2218 Male, age 76, both hemispheres 25.6
2410 Female, age 72, unknown 25.6
2223 Female, age 72, unknown 24.3
2021 Male, age 53, unknown 22.6
1915 Female, age 42, unknown 22.0
1942 Male, age 51, unknown 20.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 139

Max nTPM: 38.4
Min nTPM: 7.4
Std nTPM: 5.3
Median nTPM: 18.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 38.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 37.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 33.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 30.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 29.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 29.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 28.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 28.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 28.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 25.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 25.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.4
FF:10158-103A5 76 years, female 52.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 61.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.2
Samples: 4

Max nTPM: 63.0
Min nTPM: 52.5
Sample A Female 63.0
Sample B Female 52.5
Sample C Male 58.4
Sample D Male 58.9
Midbrain
nTPM: 62.0
Samples: 4

Max nTPM: 71.0
Min nTPM: 57.4
Sample A Female 71.0
Sample B Female 59.3
Sample C Male 60.1
Sample D Male 57.4
Periaqueductal gray
nTPM: 53.3
Samples: 3

Max nTPM: 53.9
Min nTPM: 52.8
Sample B Female 52.8
Sample C Male 53.9
Sample D Male 53.3
Superior colliculi
nTPM: 61.1
Samples: 4

Max nTPM: 67.5
Min nTPM: 52.2
Sample A Female 61.1
Sample B Female 52.2
Sample C Male 67.5
Sample D Male 63.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.5
Samples: 4

Max nTPM: 32.2
Min nTPM: 28.1
Sample A Male 32.0
Sample B Male 32.2
Sample C Female 28.1
Sample D Female 29.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73497535 Antisense, RP_051121_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0

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