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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRPRB is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
108.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
96.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
82.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
80.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
78.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
78.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
77.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
76.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
72.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
72.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
69.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
68.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
68.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
66.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
65.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
62.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
62.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
62.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
59.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
58.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
58.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
58.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
57.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
57.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
57.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
56.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
56.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
56.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
55.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
55.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
55.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
55.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
54.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
54.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
53.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
52.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
52.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
51.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
51.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
50.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
50.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
50.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
50.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
50.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
50.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
49.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
49.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
49.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
48.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
48.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
48.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
47.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
47.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
47.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
47.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
46.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
46.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
46.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
46.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
46.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
46.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
46.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
45.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
45.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
45.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
45.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
44.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
44.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
44.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
43.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
43.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
43.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
43.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
43.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
43.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
43.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
43.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
43.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
42.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
42.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
42.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
42.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
42.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
42.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
42.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
41.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
41.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
41.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
41.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
41.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
41.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
41.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
41.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
40.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
40.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
40.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
40.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
40.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
39.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
39.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
39.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
39.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
39.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
39.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
38.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
38.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
37.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
37.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
37.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
37.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
36.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
36.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
36.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
35.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
35.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
35.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
35.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
35.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
34.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
34.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
34.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
33.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
33.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
33.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
33.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
33.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
32.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
32.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
32.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
32.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
32.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
31.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
30.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
30.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
29.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
28.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
28.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
28.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
27.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
26.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
25.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
24.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
21.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRPRB is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.3
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
83.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
78.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
71.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
67.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
64.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
56.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
55.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
52.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
50.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
49.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
49.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
48.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
48.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
47.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
46.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
46.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
46.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
45.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
44.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
43.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
43.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
43.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
43.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
42.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
42.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
42.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
42.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
42.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
41.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
41.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
41.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
40.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
40.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
39.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
39.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
39.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
39.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
39.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
39.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
38.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
38.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
38.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
38.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
37.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
37.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
37.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
36.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
36.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
35.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
33.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
32.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
28.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
28.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
983
Tumor
0.8
1021
Tumor
0.8
745
Tumor
0.8
171
Tumor
0.7
741
Tumor
0.7
727
Tumor
0.7
1041
Tumor
0.6
327
Tumor
0.6
1027
Tumor
0.6
537
Tumor
0.5
557
Tumor
0.5
851
Tumor
0.5
685
Tumor
0.5
147
Tumor
0.5
965
Tumor
0.5
915
Tumor
0.5
123
Tumor
0.4
525
Tumor
0.4
435
Tumor
0.4
523
Tumor
0.4
331
Tumor
0.4
1015
Tumor
0.3
867
Tumor
0.3
863
Tumor
0.3
493
Tumor
0.3
571
Tumor
0.3
473
Tumor
0.3
817
Tumor
0.3
567
Tumor
0.3
951
Tumor
0.3
1025
Tumor
0.3
728
Normal
0.3
231
Tumor
0.3
697
Tumor
0.3
1026
Normal
0.3
746
Normal
0.3
517
Tumor
0.3
573
Tumor
0.3
724
Normal
0.3
568
Normal
0.2
451
Tumor
0.2
445
Tumor
0.2
387
Tumor
0.2
615
Tumor
0.2
351
Tumor
0.2
911
Tumor
0.2
353
Tumor
0.2
861
Tumor
0.2
636
Normal
0.2
977
Tumor
0.2
142
Normal
0.2
924
Normal
0.2
981
Tumor
0.2
341
Tumor
0.2
713
Tumor
0.2
647
Tumor
0.2
963
Tumor
0.2
868
Normal
0.2
923
Tumor
0.2
342
Normal
0.2
497
Tumor
0.2
128
Normal
0.2
1043
Tumor
0.2
481
Tumor
0.2
938
Normal
0.1
135
Tumor
0.1
862
Normal
0.1
443
Tumor
0.1
922
Normal
0.1
721
Tumor
0.1
737
Tumor
0.1
474
Normal
0.1
742
Normal
0.1
111
Normal
0.1
1022
Normal
0.1
864
Normal
0.1
813
Tumor
0.1
515
Tumor
0.1
132
Normal
0.1
518
Normal
0.1
533
Tumor
0.1
232
Normal
0.1
285
Tumor
0.1
572
Normal
0.1
696
Normal
0.1
914
Normal
0.1
816
Normal
0.1
357
Tumor
0.1
858
Normal
0.1
494
Normal
0.1
955
Tumor
0.1
1014
Normal
0.1
467
Tumor
0.1
1028
Normal
0.1
1044
Normal
0.1
913
Tumor
0.1
534
Normal
0.1
431
Tumor
0.1
436
Normal
0.1
411
Tumor
0.1
952
Normal
0.1
944
Normal
0.1
738
Normal
0.1
698
Normal
0.1
137
Tumor
0.1
1016
Normal
0.1
723
Tumor
0.1
878
Normal
0.1
564
Normal
0.1
777
Tumor
0.1
912
Normal
0.1
857
Tumor
0.1
396
Normal
0.1
546
Normal
0.0
956
Normal
0.0
488
Normal
0.0
131
Tumor
0.0
462
Normal
0.0
448
Normal
0.0
314
Normal
0.0
446
Normal
0.0
616
Normal
0.0
433
Tumor
0.0
466
Normal
0.0
395
Tumor
0.0
968
Normal
0.0
918
Normal
0.0
818
Normal
0.0
642
Normal
0.0
421
Tumor
0.0
432
Normal
0.0
852
Normal
0.0
966
Normal
0.0
786
Normal
0.0
527
Tumor
0.0
648
Normal
0.0
926
Normal
0.0
358
Normal
0.0
628
Normal
0.0
332
Normal
0.0
686
Normal
0.0
778
Normal
0.0
391
Tumor
0.0
916
Normal
0.0
223
Tumor
0.0
228
Normal
0.0
392
Normal
0.0
298
Normal
0.0
258
Normal
0.0
554
Normal
0.0
484
Normal
0.0
114
Normal
0.0
218
Normal
0.0
434
Normal
0.0
526
Normal
0.0
187
Tumor
0.0
136
Normal
0.0
958
Normal
0.0
162
Normal
0.0
148
Normal
0.0
222
Normal
0.0
824
Normal
0.0
964
Normal
0.0
472
Normal
0.0
755
Tumor
0.0
617
Tumor
0.0
278
Normal
0.0
426
Normal
0.0
186
Normal
0.0
286
Normal
0.0
722
Normal
0.0
113
Tumor
0.0
553
Tumor
0.0
362
Normal
0.0
172
Normal
0.0
1013
Tumor
0.0
714
Normal
0.0
943
Tumor
0.0
558
Normal
0.0
471
Tumor
0.0
412
Normal
0.0
874
Normal
0.0
414
Normal
-0.1
982
Normal
-0.1
356
Normal
-0.1
367
Tumor
-0.1
535
Tumor
-0.1
422
Normal
-0.1
464
Normal
-0.1
452
Normal
-0.1
365
Tumor
-0.1
328
Normal
-0.1
1032
Normal
-0.1
388
Normal
-0.1
393
Tumor
-0.1
277
Tumor
-0.1
477
Tumor
-0.1
744
Normal
-0.1
352
Normal
-0.1
195
Tumor
-0.1
524
Normal
-0.1
1042
Normal
-0.1
312
Normal
-0.1
261
Tumor
-0.1
214
Normal
-0.1
487
Tumor
-0.1
161
Tumor
-0.1
514
Normal
-0.1
528
Normal
-0.1
865
Tumor
-0.1
138
Normal
-0.1
663
Tumor
-0.1
1046
Normal
-0.1
413
Tumor
-0.1
354
Normal
-0.1
394
Normal
-0.1
257
Tumor
-0.1
424
Normal
-0.1
482
Normal
-0.1
574
Normal
-0.1
124
Normal
-0.1
386
Normal
-0.1
483
Tumor
-0.1
262
Normal
-0.1
815
Tumor
-0.1
937
Tumor
-0.1
344
Normal
-0.1
664
Normal
-0.1
866
Normal
-0.1
127
Tumor
-0.1
536
Normal
-0.1
665
Tumor
-0.1
882
Normal
-0.1
463
Tumor
-0.1
311
Tumor
-0.2
618
Normal
-0.2
461
Tumor
-0.2
368
Normal
-0.2
921
Tumor
-0.2
954
Normal
-0.2
196
Normal
-0.2
444
Normal
-0.2
756
Normal
-0.2
976
Normal
-0.2
456
Normal
-0.2
284
Normal
-0.2
268
Normal
-0.2
145
Tumor
-0.2
416
Normal
-0.2
661
Tumor
-0.2
212
Normal
-0.2
366
Normal
-0.2
126
Normal
-0.2
361
Tumor
-0.2
385
Tumor
-0.2
376
Normal
-0.2
355
Tumor
-0.2
984
Normal
-0.2
715
Tumor
-0.2
428
Normal
-0.2
217
Tumor
-0.2
716
Normal
-0.2
513
Tumor
-0.2
785
Tumor
-0.2
364
Normal
-0.2
666
Normal
-0.2
814
Normal
-0.2
427
Tumor
-0.2
538
Normal
-0.2
492
Normal
-0.2
415
Tumor
-0.2
188
Normal
-0.2
478
Normal
-0.2
227
Tumor
-0.2
627
Tumor
-0.2
662
Normal
-0.2
884
Normal
-0.2
375
Tumor
-0.2
516
Normal
-0.2
468
Normal
-0.3
267
Tumor
-0.3
185
Tumor
-0.3
423
Tumor
-0.3
125
Tumor
-0.3
465
Tumor
-0.3
191
Tumor
-0.3
146
Normal
-0.3
641
Tumor
-0.3
563
Tumor
-0.3
343
Tumor
-0.3
112
Tumor
-0.3
671
Tumor
-0.3
823
Tumor
-0.3
967
Tumor
-0.3
925
Tumor
-0.3
877
Tumor
-0.3
978
Normal
-0.3
545
Tumor
-0.3
1031
Tumor
-0.3
447
Tumor
-0.3
272
Normal
-0.3
141
Tumor
-0.3
672
Normal
-0.3
297
Tumor
-0.3
743
Tumor
-0.3
953
Tumor
-0.3
695
Tumor
-0.4
283
Tumor
-0.4
383
Tumor
-0.4
635
Tumor
-0.4
883
Tumor
-0.4
221
Tumor
-0.4
271
Tumor
-0.4
873
Tumor
-0.4
498
Normal
-0.4
384
Normal
-0.4
213
Tumor
-0.4
455
Tumor
-0.4
211
Tumor
-0.4
363
Tumor
-0.4
1045
Tumor
-0.4
881
Tumor
-0.4
957
Tumor
-0.4
224
Normal
-0.4
491
Tumor
-0.5
975
Tumor
-0.5
192
Normal
-0.6
313
Tumor
-0.6
425
Tumor
-0.6
917
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
