MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.3 nTPM
HPA Brain:12.6 nTPM
GTEx:3.3 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:14.3 nTPM
Mouse:1.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 12.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.4
2666 Male, age 74, left hemisphere 14.6
2019 Male, age 18, unknown 13.9
2586 Male, age 75, left hemisphere 12.3
2828 Female, age 72, unknown 11.8
1833 Male, age 53, unknown 11.2
1830 Male, age 51, unknown 11.1
2411 Female, age 72, unknown 11.1
1827 Male, age 72, unknown 10.1
1870 Female, age 42, unknown 9.1
2219 Male, age 76, both hemispheres 8.9
Dorsal raphe nucleus
nTPM: 9.3
1828 Male, age 53, unknown 10.3
2047 Male, age 72, unknown 9.8
2016 Female, age 72, unknown 9.3
2750 Male, age 76, both hemispheres 9.3
2298 Female, age 72, unknown 7.6
Inferior colliculus
nTPM: 10.8
1890 Male, age 53, unknown 11.7
2849 Male, age 72, unknown 11.6
1848 Female, age 42, unknown 9.9
2097 Female, age 72, unknown 9.8
Median raphe nucleus
nTPM: 10.7
2220 Male, age 76, midline 10.7
Periaquaductal grey, anterior
nTPM: 10.0
1947 Male, age 18, unknown 10.9
1795 Male, age 51, unknown 9.8
2502 Female, age 75, unknown 9.3
Periaquaductal grey, dorsal
nTPM: 9.2
1831 Male, age 72, unknown 11.2
2850 Male, age 76, both hemispheres 10.0
2464 Female, age 72, unknown 9.3
1840 Male, age 53, unknown 6.3
Periaquaductal grey, lateral
nTPM: 8.9
2140 Male, age 76, both hemispheres 10.1
2272 Male, age 74, both hemispheres 9.1
2053 Male, age 18, unknown 7.7
Pretectal area
nTPM: 10.6
2407 Male, age 75, both hemispheres 13.0
1816 Male, age 51, unknown 12.5
2007 Male, age 72, unknown 12.1
1817 Female, age 42, unknown 11.8
1815 Male, age 53, unknown 11.6
2667 Female, age 75, unknown 10.9
2316 Male, age 76, right hemisphere 10.4
1944 Female, age 72, unknown 10.1
2825 Male, age 18, unknown 9.6
2224 Female, age 72, unknown 7.7
2273 Male, age 74, both hemispheres 7.5
Red nucleus
nTPM: 11.0
1904 Male, age 53, unknown 13.6
1865 Male, age 51, unknown 12.8
2584 Male, age 75, left hemisphere 12.3
1821 Female, age 72, unknown 12.1
2588 Male, age 74, left hemisphere 11.6
2785 Male, age 18, unknown 11.3
2503 Female, age 72, unknown 10.4
2725 Female, age 75, unknown 10.2
1954 Female, age 42, unknown 10.1
2227 Male, age 72, unknown 9.7
2823 Male, age 76, right hemisphere 9.4
2769 Male, age 72, unknown 8.7
Substantia nigra
nTPM: 12.6
2409 Female, age 72, unknown 17.1
2665 Male, age 74, both hemispheres 15.6
2583 Male, age 75, right hemisphere 14.4
1941 Male, age 53, unknown 13.1
2699 Male, age 18, unknown 11.6
2590 Female, age 75, unknown 11.5
2241 Male, age 72, unknown 11.0
1851 Male, age 51, unknown 10.6
1889 Female, age 72, unknown 10.6
1916 Female, age 42, unknown 10.3
Superior colliculus
nTPM: 10.3
2668 Female, age 75, unknown 12.2
2587 Male, age 74, left hemisphere 11.7
1913 Female, age 42, unknown 11.3
1995 Male, age 72, unknown 11.1
1796 Male, age 53, unknown 10.2
2261 Male, age 18, unknown 10.0
2087 Female, age 72, unknown 9.7
2664 Male, age 75, both hemispheres 9.7
1839 Male, age 51, unknown 8.9
1895 Male, age 76, right hemisphere 8.5
Ventral tegmental area
nTPM: 10.5
1915 Female, age 42, unknown 11.9
2410 Female, age 72, unknown 11.4
2218 Male, age 76, both hemispheres 11.0
1942 Male, age 51, unknown 10.5
2223 Female, age 72, unknown 9.9
2021 Male, age 53, unknown 8.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.3
Samples: 139

Max nTPM: 11.7
Min nTPM: 0.7
Std nTPM: 1.8
Median nTPM: 2.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 11.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 8.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 8.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 8.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 7.4
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 6.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 6.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 6.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 6.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 6.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 6.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.0
FF:10158-103A5 76 years, female 28.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.3
Samples: 4

Max nTPM: 16.7
Min nTPM: 11.1
Sample A Female 11.1
Sample B Female 16.5
Sample C Male 12.9
Sample D Male 16.7
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 11.7
Min nTPM: 10.2
Sample A Female 10.9
Sample B Female 11.7
Sample C Male 10.2
Sample D Male 10.3
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 15.5
Min nTPM: 12.2
Sample B Female 12.6
Sample C Male 15.5
Sample D Male 12.2
Superior colliculi
nTPM: 11.1
Samples: 4

Max nTPM: 14.0
Min nTPM: 9.7
Sample A Female 10.1
Sample B Female 14.0
Sample C Male 9.7
Sample D Male 10.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.7
Sample A Male 1.1
Sample B Male 0.7
Sample C Female 1.1
Sample D Female 1.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69028450 Antisense, RP_050316_01_D01, Mouse strain C57BL/6J (56 days, male) 0.0

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