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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBA3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBA3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
65.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
33.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.2
777
Tumor
0.6
523
Tumor
0.4
951
Tumor
0.4
567
Tumor
0.4
147
Tumor
0.4
724
Normal
0.4
517
Tumor
0.4
125
Tumor
0.4
327
Tumor
0.4
131
Tumor
0.3
865
Tumor
0.3
427
Tumor
0.3
171
Tumor
0.3
745
Tumor
0.3
387
Tumor
0.3
283
Tumor
0.3
921
Tumor
0.2
647
Tumor
0.2
537
Tumor
0.2
1021
Tumor
0.2
1013
Tumor
0.2
483
Tumor
0.2
755
Tumor
0.2
137
Tumor
0.2
351
Tumor
0.2
451
Tumor
0.2
123
Tumor
0.2
375
Tumor
0.2
463
Tumor
0.2
257
Tumor
0.2
715
Tumor
0.2
863
Tumor
0.2
957
Tumor
0.2
221
Tumor
0.2
395
Tumor
0.2
415
Tumor
0.2
977
Tumor
0.2
525
Tumor
0.1
261
Tumor
0.1
881
Tumor
0.1
285
Tumor
0.1
737
Tumor
0.1
391
Tumor
0.1
271
Tumor
0.1
965
Tumor
0.1
785
Tumor
0.1
741
Tumor
0.1
385
Tumor
0.1
535
Tumor
0.1
1041
Tumor
0.1
313
Tumor
0.1
553
Tumor
0.1
1031
Tumor
0.1
445
Tumor
0.1
527
Tumor
0.1
487
Tumor
0.1
383
Tumor
0.1
1025
Tumor
0.1
685
Tumor
0.1
756
Normal
0.1
413
Tumor
0.1
1015
Tumor
0.1
481
Tumor
0.1
343
Tumor
0.1
473
Tumor
0.1
467
Tumor
0.1
573
Tumor
0.1
331
Tumor
0.1
917
Tumor
0.0
815
Tumor
0.0
714
Normal
0.0
363
Tumor
0.0
141
Tumor
0.0
716
Normal
0.0
367
Tumor
0.0
416
Normal
0.0
113
Tumor
0.0
661
Tumor
0.0
227
Tumor
0.0
943
Tumor
0.0
477
Tumor
0.0
813
Tumor
0.0
743
Tumor
0.0
975
Tumor
0.0
112
Tumor
0.0
861
Tumor
0.0
721
Tumor
0.0
914
Normal
0.0
814
Normal
0.0
937
Tumor
0.0
514
Normal
0.0
515
Tumor
0.0
311
Tumor
0.0
161
Tumor
0.0
497
Tumor
0.0
533
Tumor
0.0
356
Normal
0.0
926
Normal
0.0
915
Tumor
0.0
877
Tumor
0.0
433
Tumor
0.0
713
Tumor
0.0
696
Normal
0.0
727
Tumor
-0.1
545
Tumor
-0.1
211
Tumor
-0.1
671
Tumor
-0.1
738
Normal
-0.1
393
Tumor
-0.1
1043
Tumor
-0.1
455
Tumor
-0.1
518
Normal
-0.1
786
Normal
-0.1
924
Normal
-0.1
778
Normal
-0.1
192
Normal
-0.1
434
Normal
-0.1
135
Tumor
-0.1
353
Tumor
-0.1
546
Normal
-0.1
513
Tumor
-0.1
365
Tumor
-0.1
231
Tumor
-0.1
635
Tumor
-0.1
554
Normal
-0.1
862
Normal
-0.1
955
Tumor
-0.1
944
Normal
-0.1
952
Normal
-0.1
191
Tumor
-0.1
185
Tumor
-0.1
983
Tumor
-0.1
686
Normal
-0.1
111
Normal
-0.1
1026
Normal
-0.1
722
Normal
-0.1
186
Normal
-0.1
528
Normal
-0.1
212
Normal
-0.1
277
Tumor
-0.1
697
Tumor
-0.1
344
Normal
-0.1
723
Tumor
-0.1
362
Normal
-0.1
617
Tumor
-0.1
355
Tumor
-0.1
126
Normal
-0.1
817
Tumor
-0.1
461
Tumor
-0.1
366
Normal
-0.1
187
Tumor
-0.1
923
Tumor
-0.1
1045
Tumor
-0.1
342
Normal
-0.1
516
Normal
-0.1
361
Tumor
-0.1
286
Normal
-0.1
128
Normal
-0.1
746
Normal
-0.1
284
Normal
-0.1
386
Normal
-0.1
851
Tumor
-0.1
478
Normal
-0.1
878
Normal
-0.1
384
Normal
-0.1
963
Tumor
-0.1
913
Tumor
-0.1
328
Normal
-0.1
698
Normal
-0.1
436
Normal
-0.1
376
Normal
-0.1
492
Normal
-0.1
127
Tumor
-0.1
858
Normal
-0.1
498
Normal
-0.1
364
Normal
-0.1
534
Normal
-0.1
953
Tumor
-0.1
538
Normal
-0.1
728
Normal
-0.1
938
Normal
-0.1
868
Normal
-0.1
188
Normal
-0.1
742
Normal
-0.2
916
Normal
-0.2
272
Normal
-0.2
824
Normal
-0.2
472
Normal
-0.2
456
Normal
-0.2
536
Normal
-0.2
228
Normal
-0.2
421
Tumor
-0.2
297
Tumor
-0.2
368
Normal
-0.2
1022
Normal
-0.2
142
Normal
-0.2
1032
Normal
-0.2
465
Tumor
-0.2
883
Tumor
-0.2
431
Tumor
-0.2
616
Normal
-0.2
196
Normal
-0.2
213
Tumor
-0.2
818
Normal
-0.2
494
Normal
-0.2
956
Normal
-0.2
466
Normal
-0.2
432
Normal
-0.2
918
Normal
-0.2
922
Normal
-0.2
262
Normal
-0.2
132
Normal
-0.2
563
Tumor
-0.2
414
Normal
-0.2
464
Normal
-0.2
867
Tumor
-0.2
452
Normal
-0.2
114
Normal
-0.2
524
Normal
-0.2
663
Tumor
-0.2
482
Normal
-0.2
873
Tumor
-0.2
224
Normal
-0.2
448
Normal
-0.2
1046
Normal
-0.2
426
Normal
-0.2
148
Normal
-0.2
354
Normal
-0.2
471
Tumor
-0.2
412
Normal
-0.2
443
Tumor
-0.2
665
Tumor
-0.2
966
Normal
-0.2
1016
Normal
-0.2
911
Tumor
-0.2
816
Normal
-0.2
145
Tumor
-0.2
462
Normal
-0.2
392
Normal
-0.2
298
Normal
-0.2
214
Normal
-0.2
864
Normal
-0.2
358
Normal
-0.2
1042
Normal
-0.2
444
Normal
-0.2
954
Normal
-0.2
468
Normal
-0.2
1027
Tumor
-0.2
636
Normal
-0.2
744
Normal
-0.2
857
Tumor
-0.2
618
Normal
-0.2
162
Normal
-0.2
484
Normal
-0.2
146
Normal
-0.2
172
Normal
-0.2
424
Normal
-0.2
474
Normal
-0.2
874
Normal
-0.2
958
Normal
-0.2
394
Normal
-0.2
312
Normal
-0.2
982
Normal
-0.2
823
Tumor
-0.3
925
Tumor
-0.3
388
Normal
-0.3
422
Normal
-0.3
124
Normal
-0.3
136
Normal
-0.3
488
Normal
-0.3
222
Normal
-0.3
967
Tumor
-0.3
976
Normal
-0.3
574
Normal
-0.3
866
Normal
-0.3
984
Normal
-0.3
491
Tumor
-0.3
882
Normal
-0.3
258
Normal
-0.3
968
Normal
-0.3
138
Normal
-0.3
526
Normal
-0.3
627
Tumor
-0.3
852
Normal
-0.3
628
Normal
-0.3
964
Normal
-0.3
217
Tumor
-0.3
664
Normal
-0.3
223
Tumor
-0.3
642
Normal
-0.3
314
Normal
-0.3
352
Normal
-0.3
267
Tumor
-0.3
666
Normal
-0.3
641
Tumor
-0.3
195
Tumor
-0.3
268
Normal
-0.3
564
Normal
-0.3
1028
Normal
-0.3
396
Normal
-0.3
1014
Normal
-0.3
446
Normal
-0.3
493
Tumor
-0.3
435
Tumor
-0.3
981
Tumor
-0.3
662
Normal
-0.3
648
Normal
-0.3
558
Normal
-0.3
232
Normal
-0.3
341
Tumor
-0.3
278
Normal
-0.3
672
Normal
-0.3
218
Normal
-0.4
1044
Normal
-0.4
912
Normal
-0.4
978
Normal
-0.4
332
Normal
-0.4
568
Normal
-0.4
884
Normal
-0.4
571
Tumor
-0.4
557
Tumor
-0.4
447
Tumor
-0.4
428
Normal
-0.4
695
Tumor
-0.4
411
Tumor
-0.4
615
Tumor
-0.5
423
Tumor
-0.5
572
Normal
-0.5
357
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
