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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.7
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.5
743
Tumor
1.5
536
Normal
1.2
965
Tumor
1.2
535
Tumor
1.1
545
Tumor
1.0
283
Tumor
1.0
517
Tumor
1.0
363
Tumor
1.0
967
Tumor
0.9
573
Tumor
0.9
963
Tumor
0.9
524
Normal
0.9
131
Tumor
0.9
1031
Tumor
0.9
447
Tumor
0.9
492
Normal
0.8
661
Tumor
0.8
311
Tumor
0.8
478
Normal
0.8
491
Tumor
0.8
538
Normal
0.8
715
Tumor
0.7
877
Tumor
0.7
943
Tumor
0.7
975
Tumor
0.7
1015
Tumor
0.7
385
Tumor
0.7
285
Tumor
0.7
983
Tumor
0.7
724
Normal
0.6
817
Tumor
0.6
498
Normal
0.6
924
Normal
0.6
367
Tumor
0.6
917
Tumor
0.5
525
Tumor
0.5
351
Tumor
0.5
1043
Tumor
0.5
537
Tumor
0.5
916
Normal
0.5
958
Normal
0.5
878
Normal
0.5
554
Normal
0.5
297
Tumor
0.4
516
Normal
0.4
852
Normal
0.4
211
Tumor
0.4
823
Tumor
0.4
227
Tumor
0.4
553
Tumor
0.4
881
Tumor
0.4
473
Tumor
0.4
981
Tumor
0.4
494
Normal
0.4
815
Tumor
0.4
415
Tumor
0.4
686
Normal
0.4
497
Tumor
0.3
966
Normal
0.3
1041
Tumor
0.3
455
Tumor
0.3
223
Tumor
0.3
744
Normal
0.3
488
Normal
0.3
977
Tumor
0.3
867
Tumor
0.3
857
Tumor
0.3
713
Tumor
0.3
546
Normal
0.3
727
Tumor
0.3
493
Tumor
0.3
224
Normal
0.3
395
Tumor
0.3
171
Tumor
0.3
696
Normal
0.3
1028
Normal
0.3
484
Normal
0.3
861
Tumor
0.2
1032
Normal
0.2
697
Tumor
0.2
671
Tumor
0.2
984
Normal
0.2
412
Normal
0.2
976
Normal
0.2
952
Normal
0.2
918
Normal
0.2
922
Normal
0.2
874
Normal
0.2
956
Normal
0.2
851
Tumor
0.2
483
Tumor
0.2
528
Normal
0.2
383
Tumor
0.2
448
Normal
0.2
142
Normal
0.2
526
Normal
0.2
954
Normal
0.2
534
Normal
0.2
915
Tumor
0.2
212
Normal
0.2
778
Normal
0.2
944
Normal
0.2
557
Tumor
0.2
816
Normal
0.2
471
Tumor
0.1
355
Tumor
0.1
284
Normal
0.1
261
Tumor
0.1
968
Normal
0.1
192
Normal
0.1
1022
Normal
0.1
523
Tumor
0.1
435
Tumor
0.1
1025
Tumor
0.1
814
Normal
0.1
527
Tumor
0.1
716
Normal
0.1
518
Normal
0.1
461
Tumor
0.1
923
Tumor
0.1
146
Normal
0.1
883
Tumor
0.1
444
Normal
0.1
217
Tumor
0.1
1042
Normal
0.1
1044
Normal
0.1
474
Normal
0.1
138
Normal
0.1
228
Normal
0.1
124
Normal
0.1
563
Tumor
0.0
746
Normal
0.0
813
Tumor
0.0
331
Tumor
0.0
721
Tumor
0.0
413
Tumor
0.0
451
Tumor
0.0
636
Normal
0.0
756
Normal
0.0
1014
Normal
0.0
132
Normal
0.0
268
Normal
0.0
472
Normal
0.0
514
Normal
0.0
982
Normal
0.0
618
Normal
0.0
352
Normal
0.0
286
Normal
0.0
126
Normal
0.0
864
Normal
0.0
344
Normal
0.0
364
Normal
0.0
1021
Tumor
0.0
128
Normal
0.0
185
Tumor
0.0
213
Tumor
-0.1
938
Normal
-0.1
434
Normal
-0.1
127
Tumor
-0.1
858
Normal
-0.1
737
Tumor
-0.1
411
Tumor
-0.1
628
Normal
-0.1
1026
Normal
-0.1
356
Normal
-0.1
416
Normal
-0.1
742
Normal
-0.1
665
Tumor
-0.1
515
Tumor
-0.1
818
Normal
-0.1
141
Tumor
-0.1
698
Normal
-0.1
964
Normal
-0.1
873
Tumor
-0.1
926
Normal
-0.1
572
Normal
-0.1
616
Normal
-0.1
145
Tumor
-0.1
786
Normal
-0.1
487
Tumor
-0.1
462
Normal
-0.1
685
Tumor
-0.1
824
Normal
-0.1
866
Normal
-0.1
785
Tumor
-0.2
728
Normal
-0.2
421
Tumor
-0.2
862
Normal
-0.2
136
Normal
-0.2
477
Tumor
-0.2
738
Normal
-0.2
427
Tumor
-0.2
574
Normal
-0.2
913
Tumor
-0.2
482
Normal
-0.2
558
Normal
-0.2
567
Tumor
-0.2
641
Tumor
-0.2
755
Tumor
-0.2
161
Tumor
-0.2
123
Tumor
-0.2
1013
Tumor
-0.2
328
Normal
-0.2
214
Normal
-0.2
672
Normal
-0.3
1016
Normal
-0.3
914
Normal
-0.3
232
Normal
-0.3
617
Tumor
-0.3
882
Normal
-0.3
925
Tumor
-0.3
272
Normal
-0.3
714
Normal
-0.3
196
Normal
-0.3
642
Normal
-0.3
262
Normal
-0.3
433
Tumor
-0.3
955
Tumor
-0.3
868
Normal
-0.3
392
Normal
-0.3
391
Tumor
-0.3
187
Tumor
-0.3
384
Normal
-0.3
114
Normal
-0.3
1045
Tumor
-0.3
431
Tumor
-0.3
125
Tumor
-0.4
937
Tumor
-0.4
466
Normal
-0.4
745
Tumor
-0.4
568
Normal
-0.4
564
Normal
-0.4
978
Normal
-0.4
722
Normal
-0.4
111
Normal
-0.4
354
Normal
-0.4
195
Tumor
-0.4
513
Tumor
-0.4
921
Tumor
-0.4
865
Tumor
-0.4
468
Normal
-0.4
386
Normal
-0.4
332
Normal
-0.4
957
Tumor
-0.4
342
Normal
-0.4
188
Normal
-0.4
327
Tumor
-0.4
396
Normal
-0.4
137
Tumor
-0.5
362
Normal
-0.5
186
Normal
-0.5
135
Tumor
-0.5
723
Tumor
-0.5
162
Normal
-0.5
951
Tumor
-0.5
343
Tumor
-0.5
172
Normal
-0.5
376
Normal
-0.5
662
Normal
-0.5
884
Normal
-0.5
258
Normal
-0.5
912
Normal
-0.6
481
Tumor
-0.6
231
Tumor
-0.6
312
Normal
-0.6
341
Tumor
-0.6
218
Normal
-0.6
1046
Normal
-0.6
615
Tumor
-0.6
463
Tumor
-0.6
298
Normal
-0.6
148
Normal
-0.6
452
Normal
-0.6
422
Normal
-0.6
647
Tumor
-0.6
147
Tumor
-0.6
627
Tumor
-0.6
278
Normal
-0.6
456
Normal
-0.6
571
Tumor
-0.7
911
Tumor
-0.7
368
Normal
-0.7
221
Tumor
-0.7
953
Tumor
-0.7
112
Tumor
-0.7
664
Normal
-0.7
464
Normal
-0.7
467
Tumor
-0.7
394
Normal
-0.7
113
Tumor
-0.7
635
Tumor
-0.7
446
Normal
-0.7
424
Normal
-0.7
436
Normal
-0.7
432
Normal
-0.7
366
Normal
-0.7
191
Tumor
-0.7
426
Normal
-0.8
666
Normal
-0.8
314
Normal
-0.8
388
Normal
-0.8
443
Tumor
-0.8
358
Normal
-0.8
695
Tumor
-0.8
375
Tumor
-0.8
222
Normal
-0.9
428
Normal
-0.9
533
Tumor
-0.9
648
Normal
-0.9
353
Tumor
-1.0
414
Normal
-1.0
365
Tumor
-1.0
257
Tumor
-1.0
271
Tumor
-1.0
777
Tumor
-1.0
277
Tumor
-1.2
863
Tumor
-1.2
1027
Tumor
-1.2
465
Tumor
-1.2
387
Tumor
-1.3
423
Tumor
-1.3
741
Tumor
-1.4
267
Tumor
-1.4
393
Tumor
-1.4
361
Tumor
-1.4
357
Tumor
-1.5
445
Tumor
-1.7
663
Tumor
-1.8
313
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
