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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GMPPA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
111.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
101.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
95.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
93.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
91.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
83.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
78.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
76.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
74.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
73.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
73.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
71.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
70.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
68.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
68.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
68.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
66.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
65.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
65.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
64.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
64.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
63.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
62.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
62.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
62.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
62.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
62.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
62.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
61.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
61.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
61.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
61.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
60.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
60.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
60.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
59.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
58.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
58.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
57.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
57.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
57.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
57.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
57.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
57.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
57.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
57.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
56.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
56.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
56.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
56.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
55.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
55.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
55.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
54.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
54.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
54.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
53.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
53.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
53.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
53.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
53.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
52.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
52.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
52.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
52.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
51.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
51.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
51.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
51.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
51.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
51.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
51.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
50.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
50.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
50.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
50.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
49.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
49.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
49.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
49.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
49.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
48.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
48.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
48.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
48.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
48.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
48.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
48.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
47.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
47.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
47.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
47.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
47.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
47.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
47.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
47.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
46.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
45.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
45.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
45.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
45.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
44.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
44.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
44.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
43.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
43.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
43.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
42.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
42.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
42.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
42.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
41.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
41.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
41.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
41.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
41.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
41.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
41.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
40.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
40.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
40.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
40.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
39.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
39.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
39.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
39.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
39.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
39.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
39.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
39.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
39.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
38.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
38.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
38.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
37.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
37.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
37.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
37.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
37.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
35.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
35.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
35.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
34.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
34.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
34.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
34.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
34.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
33.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
33.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
33.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
33.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
33.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
33.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
31.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
31.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
30.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
30.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
29.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
28.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
27.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
27.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
25.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
25.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GMPPA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.1
Number of samples
231
Samples
Sample
Description
TPM
DO23526
0 years, male, NA, stage:3, alive, 1050 days
91.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
85.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
72.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
71.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
67.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
66.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
66.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
65.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
65.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
62.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
60.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
59.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
59.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
53.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
53.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
52.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
52.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
52.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
50.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
49.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
49.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
49.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
48.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
47.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
46.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
46.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
46.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
46.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
46.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
46.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
45.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
45.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
45.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
45.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
44.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
44.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
43.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
43.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
41.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
41.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
40.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
40.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
39.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
39.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
39.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
39.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
38.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
38.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
38.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
37.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
37.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
37.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
35.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
35.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
35.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
35.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
34.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
34.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
33.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
33.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
32.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
32.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
31.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
30.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
30.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
29.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
27.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
0.7
1026
Normal
0.5
436
Normal
0.5
298
Normal
0.5
414
Normal
0.5
222
Normal
0.5
456
Normal
0.5
615
Tumor
0.5
218
Normal
0.5
365
Tumor
0.5
432
Normal
0.4
818
Normal
0.4
424
Normal
0.4
738
Normal
0.4
111
Normal
0.4
353
Tumor
0.4
342
Normal
0.4
186
Normal
0.4
446
Normal
0.4
445
Tumor
0.4
376
Normal
0.4
568
Normal
0.4
223
Tumor
0.4
723
Tumor
0.4
162
Normal
0.4
464
Normal
0.4
196
Normal
0.4
824
Normal
0.4
618
Normal
0.4
482
Normal
0.4
426
Normal
0.4
332
Normal
0.3
314
Normal
0.3
452
Normal
0.3
137
Tumor
0.3
617
Tumor
0.3
286
Normal
0.3
746
Normal
0.3
357
Tumor
0.3
114
Normal
0.3
327
Tumor
0.3
964
Normal
0.3
124
Normal
0.3
428
Normal
0.3
862
Normal
0.3
451
Tumor
0.3
756
Normal
0.3
141
Tumor
0.3
1016
Normal
0.3
138
Normal
0.3
112
Tumor
0.3
146
Normal
0.3
258
Normal
0.3
422
Normal
0.3
463
Tumor
0.3
466
Normal
0.3
925
Tumor
0.3
778
Normal
0.3
664
Normal
0.3
272
Normal
0.3
386
Normal
0.3
132
Normal
0.3
742
Normal
0.3
1014
Normal
0.3
574
Normal
0.3
472
Normal
0.3
462
Normal
0.3
113
Tumor
0.3
394
Normal
0.2
368
Normal
0.2
358
Normal
0.2
354
Normal
0.2
642
Normal
0.2
341
Tumor
0.2
813
Tumor
0.2
966
Normal
0.2
172
Normal
0.2
148
Normal
0.2
396
Normal
0.2
434
Normal
0.2
142
Normal
0.2
528
Normal
0.2
952
Normal
0.2
714
Normal
0.2
1015
Tumor
0.2
1046
Normal
0.2
385
Tumor
0.2
468
Normal
0.2
352
Normal
0.2
136
Normal
0.2
312
Normal
0.2
1044
Normal
0.2
416
Normal
0.2
858
Normal
0.2
1032
Normal
0.2
926
Normal
0.2
366
Normal
0.2
413
Tumor
0.2
1022
Normal
0.2
648
Normal
0.2
816
Normal
0.2
722
Normal
0.2
628
Normal
0.2
884
Normal
0.2
362
Normal
0.2
392
Normal
0.2
278
Normal
0.2
922
Normal
0.2
882
Normal
0.2
564
Normal
0.2
262
Normal
0.2
938
Normal
0.2
474
Normal
0.2
554
Normal
0.2
777
Tumor
0.2
192
Normal
0.2
217
Tumor
0.2
277
Tumor
0.2
868
Normal
0.2
526
Normal
0.2
616
Normal
0.2
534
Normal
0.2
356
Normal
0.2
914
Normal
0.1
546
Normal
0.1
514
Normal
0.1
924
Normal
0.1
214
Normal
0.1
232
Normal
0.1
171
Tumor
0.1
228
Normal
0.1
331
Tumor
0.1
518
Normal
0.1
433
Tumor
0.1
666
Normal
0.1
728
Normal
0.1
364
Normal
0.1
145
Tumor
0.1
572
Normal
0.1
878
Normal
0.1
126
Normal
0.1
261
Tumor
0.1
344
Normal
0.1
698
Normal
0.1
982
Normal
0.1
195
Tumor
0.1
721
Tumor
0.1
737
Tumor
0.1
744
Normal
0.1
573
Tumor
0.1
944
Normal
0.1
481
Tumor
0.1
383
Tumor
0.1
395
Tumor
0.1
231
Tumor
0.1
984
Normal
0.1
387
Tumor
0.1
857
Tumor
0.1
866
Normal
0.1
696
Normal
0.1
663
Tumor
0.1
128
Normal
0.1
978
Normal
0.1
412
Normal
0.1
716
Normal
0.1
1028
Normal
0.1
786
Normal
0.1
636
Normal
0.1
955
Tumor
0.1
956
Normal
0.1
488
Normal
0.1
187
Tumor
0.1
976
Normal
0.1
558
Normal
0.1
874
Normal
0.1
313
Tumor
0.1
421
Tumor
0.1
484
Normal
0.0
814
Normal
0.0
1042
Normal
0.0
912
Normal
0.0
443
Tumor
0.0
361
Tumor
0.0
662
Normal
0.0
1045
Tumor
0.0
864
Normal
0.0
557
Tumor
0.0
918
Normal
0.0
388
Normal
0.0
685
Tumor
0.0
913
Tumor
0.0
311
Tumor
0.0
465
Tumor
0.0
745
Tumor
0.0
271
Tumor
0.0
384
Normal
0.0
686
Normal
0.0
516
Normal
0.0
415
Tumor
0.0
147
Tumor
0.0
873
Tumor
0.0
284
Normal
0.0
917
Tumor
0.0
285
Tumor
0.0
212
Normal
0.0
328
Normal
0.0
968
Normal
0.0
188
Normal
0.0
515
Tumor
0.0
257
Tumor
0.0
391
Tumor
0.0
1025
Tumor
0.0
367
Tumor
0.0
393
Tumor
0.0
467
Tumor
0.0
535
Tumor
0.0
852
Normal
0.0
423
Tumor
0.0
135
Tumor
0.0
741
Tumor
0.0
883
Tumor
0.0
958
Normal
-0.1
448
Normal
-0.1
981
Tumor
-0.1
563
Tumor
-0.1
647
Tumor
-0.1
125
Tumor
-0.1
268
Normal
-0.1
527
Tumor
-0.1
755
Tumor
-0.1
494
Normal
-0.1
297
Tumor
-0.1
983
Tumor
-0.1
743
Tumor
-0.1
127
Tumor
-0.1
343
Tumor
-0.1
724
Normal
-0.1
937
Tumor
-0.1
1041
Tumor
-0.1
672
Normal
-0.1
185
Tumor
-0.1
191
Tumor
-0.1
916
Normal
-0.1
161
Tumor
-0.1
1021
Tumor
-0.1
627
Tumor
-0.1
536
Normal
-0.1
697
Tumor
-0.1
665
Tumor
-0.1
865
Tumor
-0.1
123
Tumor
-0.1
1027
Tumor
-0.1
513
Tumor
-0.1
695
Tumor
-0.2
224
Normal
-0.2
267
Tumor
-0.2
523
Tumor
-0.2
877
Tumor
-0.2
478
Normal
-0.2
431
Tumor
-0.2
923
Tumor
-0.2
455
Tumor
-0.2
375
Tumor
-0.2
498
Normal
-0.2
815
Tumor
-0.2
571
Tumor
-0.2
635
Tumor
-0.2
461
Tumor
-0.2
213
Tumor
-0.2
713
Tumor
-0.2
221
Tumor
-0.2
351
Tumor
-0.2
823
Tumor
-0.2
954
Normal
-0.3
567
Tumor
-0.3
911
Tumor
-0.3
921
Tumor
-0.3
517
Tumor
-0.3
524
Normal
-0.3
435
Tumor
-0.3
497
Tumor
-0.3
487
Tumor
-0.3
492
Normal
-0.3
283
Tumor
-0.3
915
Tumor
-0.3
427
Tumor
-0.3
1043
Tumor
-0.3
977
Tumor
-0.3
867
Tumor
-0.3
444
Normal
-0.3
1031
Tumor
-0.3
727
Tumor
-0.3
943
Tumor
-0.4
953
Tumor
-0.4
851
Tumor
-0.4
425
Tumor
-0.4
715
Tumor
-0.4
477
Tumor
-0.4
211
Tumor
-0.4
525
Tumor
-0.4
881
Tumor
-0.4
671
Tumor
-0.4
538
Normal
-0.4
661
Tumor
-0.4
473
Tumor
-0.4
545
Tumor
-0.4
411
Tumor
-0.4
951
Tumor
-0.4
355
Tumor
-0.4
447
Tumor
-0.4
817
Tumor
-0.5
957
Tumor
-0.5
363
Tumor
-0.5
553
Tumor
-0.5
785
Tumor
-0.5
641
Tumor
-0.5
471
Tumor
-0.5
1013
Tumor
-0.6
861
Tumor
-0.6
967
Tumor
-0.6
963
Tumor
-0.6
483
Tumor
-0.6
131
Tumor
-0.6
965
Tumor
-0.6
491
Tumor
-0.7
975
Tumor
-0.7
537
Tumor
-0.7
533
Tumor
-0.7
227
Tumor
-0.7
493
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
