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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VGLL4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
87.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
85.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
61.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
53.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VGLL4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
49.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
47.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
43.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
2.3
883
Tumor
1.5
311
Tumor
1.1
743
Tumor
0.9
557
Tumor
0.8
283
Tumor
0.8
967
Tumor
0.7
741
Tumor
0.6
535
Tumor
0.6
817
Tumor
0.6
388
Normal
0.5
923
Tumor
0.5
297
Tumor
0.5
813
Tumor
0.5
737
Tumor
0.4
873
Tumor
0.4
355
Tumor
0.4
921
Tumor
0.4
394
Normal
0.4
685
Tumor
0.4
471
Tumor
0.4
411
Tumor
0.4
1021
Tumor
0.4
865
Tumor
0.4
715
Tumor
0.4
447
Tumor
0.4
963
Tumor
0.4
957
Tumor
0.4
533
Tumor
0.4
455
Tumor
0.4
877
Tumor
0.4
925
Tumor
0.3
314
Normal
0.3
814
Normal
0.3
487
Tumor
0.3
966
Normal
0.3
491
Tumor
0.3
1031
Tumor
0.3
313
Tumor
0.3
483
Tumor
0.3
232
Normal
0.2
332
Normal
0.2
396
Normal
0.2
331
Tumor
0.2
497
Tumor
0.2
425
Tumor
0.2
258
Normal
0.2
777
Tumor
0.2
545
Tumor
0.2
537
Tumor
0.2
536
Normal
0.2
278
Normal
0.2
697
Tumor
0.2
915
Tumor
0.2
492
Normal
0.2
268
Normal
0.2
298
Normal
0.2
951
Tumor
0.2
661
Tumor
0.2
983
Tumor
0.2
861
Tumor
0.1
386
Normal
0.1
513
Tumor
0.1
815
Tumor
0.1
1027
Tumor
0.1
211
Tumor
0.1
823
Tumor
0.1
975
Tumor
0.1
943
Tumor
0.1
881
Tumor
0.1
474
Normal
0.1
285
Tumor
0.1
312
Normal
0.1
525
Tumor
0.1
223
Tumor
0.1
231
Tumor
0.1
538
Normal
0.1
727
Tumor
0.1
493
Tumor
0.1
635
Tumor
0.1
392
Normal
0.1
267
Tumor
0.0
1043
Tumor
0.0
363
Tumor
0.0
917
Tumor
0.0
391
Tumor
0.0
724
Normal
0.0
911
Tumor
0.0
1025
Tumor
0.0
867
Tumor
0.0
1041
Tumor
0.0
261
Tumor
0.0
527
Tumor
0.0
553
Tumor
0.0
257
Tumor
0.0
965
Tumor
0.0
785
Tumor
0.0
262
Normal
0.0
461
Tumor
0.0
953
Tumor
0.0
451
Tumor
-0.1
272
Normal
-0.1
755
Tumor
-0.1
465
Tumor
-0.1
431
Tumor
-0.1
913
Tumor
-0.1
277
Tumor
-0.1
686
Normal
-0.1
695
Tumor
-0.1
448
Normal
-0.1
671
Tumor
-0.1
862
Normal
-0.1
744
Normal
-0.1
327
Tumor
-0.1
433
Tumor
-0.1
415
Tumor
-0.1
723
Tumor
-0.1
1045
Tumor
-0.1
462
Normal
-0.1
728
Normal
-0.1
271
Tumor
-0.1
443
Tumor
-0.1
866
Normal
-0.2
863
Tumor
-0.2
1013
Tumor
-0.2
452
Normal
-0.2
742
Normal
-0.2
472
Normal
-0.2
477
Tumor
-0.2
523
Tumor
-0.2
878
Normal
-0.2
412
Normal
-0.2
515
Tumor
-0.2
864
Normal
-0.2
937
Tumor
-0.2
567
Tumor
-0.2
924
Normal
-0.2
977
Tumor
-0.2
434
Normal
-0.2
647
Tumor
-0.2
982
Normal
-0.2
1015
Tumor
-0.2
786
Normal
-0.2
385
Tumor
-0.2
573
Tumor
-0.2
868
Normal
-0.2
481
Tumor
-0.3
745
Tumor
-0.3
387
Tumor
-0.3
393
Tumor
-0.3
482
Normal
-0.3
738
Normal
-0.3
463
Tumor
-0.3
395
Tumor
-0.3
952
Normal
-0.3
554
Normal
-0.3
874
Normal
-0.3
284
Normal
-0.3
721
Tumor
-0.3
955
Tumor
-0.3
665
Tumor
-0.3
778
Normal
-0.3
663
Tumor
-0.3
224
Normal
-0.3
328
Normal
-0.3
713
Tumor
-0.3
1028
Normal
-0.3
914
Normal
-0.4
916
Normal
-0.4
851
Tumor
-0.4
857
Tumor
-0.4
981
Tumor
-0.4
444
Normal
-0.4
756
Normal
-0.4
356
Normal
-0.4
478
Normal
-0.4
416
Normal
-0.4
1026
Normal
-0.4
421
Tumor
-0.4
1044
Normal
-0.4
228
Normal
-0.4
716
Normal
-0.4
445
Tumor
-0.4
227
Tumor
-0.5
696
Normal
-0.5
518
Normal
-0.5
546
Normal
-0.5
1016
Normal
-0.5
498
Normal
-0.5
698
Normal
-0.5
488
Normal
-0.5
528
Normal
-0.5
968
Normal
-0.5
517
Tumor
-0.5
435
Tumor
-0.5
212
Normal
-0.5
494
Normal
-0.5
286
Normal
-0.6
956
Normal
-0.6
516
Normal
-0.6
524
Normal
-0.6
534
Normal
-0.6
364
Normal
-0.6
816
Normal
-0.6
746
Normal
-0.6
662
Normal
-0.7
423
Tumor
-0.7
944
Normal
-0.7
984
Normal
-0.7
714
Normal
-0.7
427
Tumor
-0.7
1022
Normal
-0.7
467
Tumor
-0.7
958
Normal
-0.7
436
Normal
-0.8
954
Normal
-0.8
884
Normal
-0.8
446
Normal
-0.8
484
Normal
-0.8
922
Normal
-0.8
852
Normal
-0.8
918
Normal
-0.8
722
Normal
-0.8
413
Tumor
-0.8
1046
Normal
-0.8
976
Normal
-0.9
672
Normal
-0.9
882
Normal
-0.9
1042
Normal
-0.9
466
Normal
-0.9
666
Normal
-0.9
938
Normal
-0.9
664
Normal
-0.9
526
Normal
-1.0
617
Tumor
-1.0
964
Normal
-1.0
1032
Normal
-1.0
456
Normal
-1.0
978
Normal
-1.0
926
Normal
-1.0
468
Normal
-1.1
464
Normal
-1.1
648
Normal
-1.1
563
Tumor
-1.1
1014
Normal
-1.1
568
Normal
-1.2
858
Normal
-1.2
818
Normal
-1.2
824
Normal
-1.2
571
Tumor
-1.2
426
Normal
-1.2
432
Normal
-1.2
627
Tumor
-1.3
422
Normal
-1.3
558
Normal
-1.3
564
Normal
-1.3
574
Normal
-1.4
572
Normal
-1.4
912
Normal
-1.5
615
Tumor
-1.7
514
Normal
-1.7
414
Normal
-1.8
636
Normal
-1.9
618
Normal
-2.0
428
Normal
-2.1
628
Normal
-2.2
424
Normal
-2.4
641
Tumor
-2.4
642
Normal
-2.6
616
Normal
-2.7
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
