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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COPS7B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COPS7B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.9
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
39.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
39.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
1.3
743
Tumor
1.2
131
Tumor
1.0
567
Tumor
1.0
473
Tumor
0.9
351
Tumor
0.9
727
Tumor
0.9
1027
Tumor
0.8
331
Tumor
0.8
425
Tumor
0.7
517
Tumor
0.7
737
Tumor
0.7
435
Tumor
0.7
497
Tumor
0.7
283
Tumor
0.7
724
Normal
0.7
573
Tumor
0.6
147
Tumor
0.6
535
Tumor
0.6
527
Tumor
0.6
745
Tumor
0.6
1025
Tumor
0.6
477
Tumor
0.6
393
Tumor
0.5
685
Tumor
0.5
211
Tumor
0.5
955
Tumor
0.5
553
Tumor
0.5
171
Tumor
0.5
545
Tumor
0.5
1021
Tumor
0.5
533
Tumor
0.5
391
Tumor
0.5
1031
Tumor
0.5
877
Tumor
0.5
557
Tumor
0.5
815
Tumor
0.5
297
Tumor
0.5
231
Tumor
0.4
671
Tumor
0.4
447
Tumor
0.4
367
Tumor
0.4
715
Tumor
0.4
271
Tumor
0.4
661
Tumor
0.4
463
Tumor
0.4
523
Tumor
0.4
537
Tumor
0.4
387
Tumor
0.4
277
Tumor
0.4
471
Tumor
0.4
491
Tumor
0.4
363
Tumor
0.4
227
Tumor
0.4
695
Tumor
0.4
455
Tumor
0.4
921
Tumor
0.4
863
Tumor
0.4
445
Tumor
0.4
965
Tumor
0.3
332
Normal
0.3
487
Tumor
0.3
413
Tumor
0.3
813
Tumor
0.3
953
Tumor
0.3
1043
Tumor
0.3
195
Tumor
0.3
451
Tumor
0.3
937
Tumor
0.3
493
Tumor
0.3
483
Tumor
0.3
385
Tumor
0.3
221
Tumor
0.3
312
Normal
0.3
722
Normal
0.3
431
Tumor
0.2
956
Normal
0.2
662
Normal
0.2
713
Tumor
0.2
641
Tumor
0.2
278
Normal
0.2
125
Tumor
0.2
957
Tumor
0.2
951
Tumor
0.2
785
Tumor
0.2
1013
Tumor
0.2
355
Tumor
0.2
967
Tumor
0.2
311
Tumor
0.2
983
Tumor
0.2
663
Tumor
0.2
665
Tumor
0.2
498
Normal
0.2
314
Normal
0.2
415
Tumor
0.2
223
Tumor
0.2
213
Tumor
0.2
741
Tumor
0.2
914
Normal
0.2
481
Tumor
0.2
365
Tumor
0.2
881
Tumor
0.1
977
Tumor
0.1
261
Tumor
0.1
257
Tumor
0.1
923
Tumor
0.1
313
Tumor
0.1
478
Normal
0.1
298
Normal
0.1
113
Tumor
0.1
328
Normal
0.1
492
Normal
0.1
883
Tumor
0.1
814
Normal
0.1
952
Normal
0.1
357
Tumor
0.1
716
Normal
0.1
343
Tumor
0.1
976
Normal
0.1
515
Tumor
0.1
851
Tumor
0.1
714
Normal
0.1
697
Tumor
0.1
635
Tumor
0.1
696
Normal
0.1
284
Normal
0.1
943
Tumor
0.1
777
Tumor
0.1
861
Tumor
0.1
938
Normal
0.1
944
Normal
0.0
217
Tumor
0.0
472
Normal
0.0
915
Tumor
0.0
823
Tumor
0.0
686
Normal
0.0
421
Tumor
0.0
917
Tumor
0.0
538
Normal
0.0
461
Tumor
0.0
443
Tumor
0.0
375
Tumor
0.0
721
Tumor
0.0
224
Normal
0.0
647
Tumor
0.0
137
Tumor
0.0
778
Normal
0.0
212
Normal
0.0
882
Normal
0.0
911
Tumor
0.0
427
Tumor
0.0
755
Tumor
0.0
524
Normal
0.0
536
Normal
0.0
958
Normal
0.0
433
Tumor
0.0
878
Normal
0.0
925
Tumor
0.0
484
Normal
0.0
1045
Tumor
0.0
135
Tumor
0.0
738
Normal
-0.1
664
Normal
-0.1
516
Normal
-0.1
857
Tumor
-0.1
574
Normal
-0.1
546
Normal
-0.1
423
Tumor
-0.1
964
Normal
-0.1
525
Tumor
-0.1
394
Normal
-0.1
617
Tumor
-0.1
963
Tumor
-0.1
528
Normal
-0.1
494
Normal
-0.1
672
Normal
-0.1
728
Normal
-0.1
416
Normal
-0.1
975
Tumor
-0.1
411
Tumor
-0.1
467
Tumor
-0.1
192
Normal
-0.1
482
Normal
-0.1
136
Normal
-0.1
456
Normal
-0.1
185
Tumor
-0.1
218
Normal
-0.1
267
Tumor
-0.1
488
Normal
-0.1
386
Normal
-0.1
187
Tumor
-0.1
395
Tumor
-0.1
268
Normal
-0.2
723
Tumor
-0.2
648
Normal
-0.2
222
Normal
-0.2
571
Tumor
-0.2
327
Tumor
-0.2
858
Normal
-0.2
141
Tumor
-0.2
145
Tumor
-0.2
627
Tumor
-0.2
361
Tumor
-0.2
392
Normal
-0.2
534
Normal
-0.2
262
Normal
-0.2
228
Normal
-0.2
186
Normal
-0.2
468
Normal
-0.2
364
Normal
-0.2
366
Normal
-0.2
214
Normal
-0.2
258
Normal
-0.2
452
Normal
-0.2
188
Normal
-0.2
742
Normal
-0.2
465
Tumor
-0.2
162
Normal
-0.2
558
Normal
-0.2
436
Normal
-0.2
191
Tumor
-0.2
272
Normal
-0.2
966
Normal
-0.2
172
Normal
-0.2
563
Tumor
-0.2
698
Normal
-0.2
968
Normal
-0.2
466
Normal
-0.2
867
Tumor
-0.2
746
Normal
-0.2
462
Normal
-0.2
884
Normal
-0.2
1026
Normal
-0.2
1028
Normal
-0.2
1015
Tumor
-0.2
396
Normal
-0.2
554
Normal
-0.2
474
Normal
-0.2
161
Tumor
-0.2
434
Normal
-0.2
126
Normal
-0.3
518
Normal
-0.3
388
Normal
-0.3
383
Tumor
-0.3
132
Normal
-0.3
981
Tumor
-0.3
138
Normal
-0.3
868
Normal
-0.3
873
Tumor
-0.3
1032
Normal
-0.3
146
Normal
-0.3
874
Normal
-0.3
513
Tumor
-0.3
112
Tumor
-0.3
924
Normal
-0.3
412
Normal
-0.3
444
Normal
-0.3
954
Normal
-0.3
464
Normal
-0.3
422
Normal
-0.3
142
Normal
-0.3
114
Normal
-0.3
286
Normal
-0.3
982
Normal
-0.3
817
Tumor
-0.3
816
Normal
-0.3
922
Normal
-0.3
1041
Tumor
-0.3
196
Normal
-0.3
414
Normal
-0.3
1042
Normal
-0.3
446
Normal
-0.3
148
Normal
-0.3
744
Normal
-0.3
362
Normal
-0.3
127
Tumor
-0.3
642
Normal
-0.3
918
Normal
-0.4
916
Normal
-0.4
353
Tumor
-0.4
913
Tumor
-0.4
232
Normal
-0.4
432
Normal
-0.4
1022
Normal
-0.4
368
Normal
-0.4
514
Normal
-0.4
428
Normal
-0.4
615
Tumor
-0.4
341
Tumor
-0.4
786
Normal
-0.4
344
Normal
-0.4
358
Normal
-0.4
424
Normal
-0.4
852
Normal
-0.4
866
Normal
-0.4
572
Normal
-0.4
342
Normal
-0.5
618
Normal
-0.5
926
Normal
-0.5
526
Normal
-0.5
1014
Normal
-0.5
978
Normal
-0.5
123
Tumor
-0.5
912
Normal
-0.5
865
Tumor
-0.5
666
Normal
-0.5
818
Normal
-0.5
426
Normal
-0.5
568
Normal
-0.5
756
Normal
-0.5
384
Normal
-0.5
356
Normal
-0.5
1044
Normal
-0.5
984
Normal
-0.5
564
Normal
-0.5
1016
Normal
-0.5
352
Normal
-0.6
376
Normal
-0.6
824
Normal
-0.6
864
Normal
-0.6
354
Normal
-0.6
124
Normal
-0.6
1046
Normal
-0.6
628
Normal
-0.6
111
Normal
-0.6
862
Normal
-0.7
128
Normal
-0.7
448
Normal
-0.8
636
Normal
-0.8
616
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
