MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.4 nTPM
HPA Brain:7.1 nTPM
GTEx:0.4 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:3.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 7.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.0
1870 Female, age 42, unknown 7.9
2586 Male, age 75, left hemisphere 7.0
1833 Male, age 53, unknown 6.4
2411 Female, age 72, unknown 6.3
1827 Male, age 72, unknown 6.2
2219 Male, age 76, both hemispheres 5.6
2019 Male, age 18, unknown 5.4
1830 Male, age 51, unknown 5.3
2828 Female, age 72, unknown 5.2
2666 Male, age 74, left hemisphere 4.6
Dorsal raphe nucleus
nTPM: 6.1
2016 Female, age 72, unknown 6.8
2047 Male, age 72, unknown 6.5
1828 Male, age 53, unknown 5.8
2750 Male, age 76, both hemispheres 5.8
2298 Female, age 72, unknown 5.6
Inferior colliculus
nTPM: 6.2
1890 Male, age 53, unknown 7.2
1848 Female, age 42, unknown 6.2
2097 Female, age 72, unknown 5.7
2849 Male, age 72, unknown 5.6
Median raphe nucleus
nTPM: 4.9
2220 Male, age 76, midline 4.9
Periaquaductal grey, anterior
nTPM: 6.4
1947 Male, age 18, unknown 7.6
2502 Female, age 75, unknown 6.0
1795 Male, age 51, unknown 5.6
Periaquaductal grey, dorsal
nTPM: 5.9
2464 Female, age 72, unknown 6.6
1831 Male, age 72, unknown 5.9
2850 Male, age 76, both hemispheres 5.8
1840 Male, age 53, unknown 5.4
Periaquaductal grey, lateral
nTPM: 4.7
2053 Male, age 18, unknown 6.0
2272 Male, age 74, both hemispheres 4.6
2140 Male, age 76, both hemispheres 3.5
Pretectal area
nTPM: 5.6
1816 Male, age 51, unknown 6.7
1944 Female, age 72, unknown 6.7
2224 Female, age 72, unknown 6.2
2273 Male, age 74, both hemispheres 6.1
1815 Male, age 53, unknown 6.0
1817 Female, age 42, unknown 5.8
2007 Male, age 72, unknown 5.7
2407 Male, age 75, both hemispheres 5.1
2825 Male, age 18, unknown 4.9
2667 Female, age 75, unknown 4.6
2316 Male, age 76, right hemisphere 4.2
Red nucleus
nTPM: 5.5
1821 Female, age 72, unknown 6.6
2227 Male, age 72, unknown 6.3
1904 Male, age 53, unknown 6.2
2584 Male, age 75, left hemisphere 6.1
2769 Male, age 72, unknown 6.0
2503 Female, age 72, unknown 5.8
2823 Male, age 76, right hemisphere 5.3
1865 Male, age 51, unknown 5.2
2588 Male, age 74, left hemisphere 5.0
2725 Female, age 75, unknown 5.0
2785 Male, age 18, unknown 4.8
1954 Female, age 42, unknown 4.0
Substantia nigra
nTPM: 7.1
2409 Female, age 72, unknown 9.8
2590 Female, age 75, unknown 8.2
1889 Female, age 72, unknown 7.7
2665 Male, age 74, both hemispheres 7.6
2699 Male, age 18, unknown 7.0
1851 Male, age 51, unknown 6.9
2241 Male, age 72, unknown 6.7
1916 Female, age 42, unknown 6.0
2583 Male, age 75, right hemisphere 5.5
1941 Male, age 53, unknown 5.2
Superior colliculus
nTPM: 5.8
2664 Male, age 75, both hemispheres 7.2
1839 Male, age 51, unknown 7.1
2668 Female, age 75, unknown 6.7
1913 Female, age 42, unknown 6.4
2087 Female, age 72, unknown 5.6
1895 Male, age 76, right hemisphere 5.3
1796 Male, age 53, unknown 5.2
2261 Male, age 18, unknown 5.2
2587 Male, age 74, left hemisphere 4.9
1995 Male, age 72, unknown 4.5
Ventral tegmental area
nTPM: 6.6
2218 Male, age 76, both hemispheres 7.5
2021 Male, age 53, unknown 7.3
2410 Female, age 72, unknown 7.1
1915 Female, age 42, unknown 6.3
1942 Male, age 51, unknown 6.0
2223 Female, age 72, unknown 5.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 0.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.4
Samples: 139

Max nTPM: 1.0
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 1.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 0.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 0.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 0.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 0.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 0.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 0.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 0.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 0.7
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 0.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.4
FF:10158-103A5 76 years, female 33.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.9
Samples: 4

Max nTPM: 25.4
Min nTPM: 18.8
Sample A Female 19.7
Sample B Female 25.4
Sample C Male 19.8
Sample D Male 18.8
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 18.6
Min nTPM: 17.0
Sample A Female 17.7
Sample B Female 18.6
Sample C Male 18.4
Sample D Male 17.0
Periaqueductal gray
nTPM: 18.5
Samples: 3

Max nTPM: 19.4
Min nTPM: 17.7
Sample B Female 18.3
Sample C Male 17.7
Sample D Male 19.4
Superior colliculi
nTPM: 19.2
Samples: 4

Max nTPM: 24.2
Min nTPM: 16.7
Sample A Female 16.7
Sample B Female 24.2
Sample C Male 18.5
Sample D Male 17.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.5
Sample A Male 2.5
Sample B Male 4.3
Sample C Female 4.4
Sample D Female 3.8

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