We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THNSL2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
112.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
82.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
69.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
62.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
59.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
55.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
55.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
54.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
51.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
46.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
44.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
44.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
42.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
41.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
40.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
40.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
40.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
39.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
37.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
37.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
37.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
36.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
36.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
35.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
35.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
34.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
34.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
33.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
32.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
31.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
30.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
29.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
29.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
29.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
28.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
27.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
26.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
24.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
23.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THNSL2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.8
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
81.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
63.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
59.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
48.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
41.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
40.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
39.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
35.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
35.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
35.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
34.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
31.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
723
Tumor
1.9
858
Normal
1.7
756
Normal
1.6
481
Tumor
1.6
728
Normal
1.5
862
Normal
1.4
528
Normal
1.4
222
Normal
1.4
918
Normal
1.4
364
Normal
1.4
366
Normal
1.4
742
Normal
1.3
648
Normal
1.3
1042
Normal
1.3
857
Tumor
1.3
446
Normal
1.3
818
Normal
1.2
482
Normal
1.2
778
Normal
1.2
564
Normal
1.2
468
Normal
1.2
981
Tumor
1.2
1046
Normal
1.2
714
Normal
1.1
924
Normal
1.1
188
Normal
1.1
111
Normal
1.1
466
Normal
1.1
388
Normal
1.1
698
Normal
1.1
866
Normal
1.1
864
Normal
1.1
278
Normal
1.1
666
Normal
1.1
312
Normal
1.1
258
Normal
1.1
642
Normal
1.1
616
Normal
1.1
852
Normal
1.1
954
Normal
1.0
956
Normal
1.0
914
Normal
1.0
955
Tumor
1.0
964
Normal
1.0
518
Normal
1.0
952
Normal
1.0
396
Normal
1.0
212
Normal
1.0
968
Normal
1.0
554
Normal
1.0
452
Normal
1.0
344
Normal
1.0
272
Normal
1.0
262
Normal
1.0
574
Normal
1.0
1032
Normal
1.0
744
Normal
1.0
727
Tumor
1.0
286
Normal
1.0
284
Normal
0.9
162
Normal
0.9
128
Normal
0.9
982
Normal
0.9
824
Normal
0.9
912
Normal
0.9
1022
Normal
0.9
786
Normal
0.9
456
Normal
0.9
755
Tumor
0.9
464
Normal
0.8
636
Normal
0.8
436
Normal
0.8
1044
Normal
0.8
696
Normal
0.8
538
Normal
0.8
426
Normal
0.8
477
Tumor
0.8
416
Normal
0.8
662
Normal
0.8
142
Normal
0.8
196
Normal
0.8
746
Normal
0.8
861
Tumor
0.8
114
Normal
0.8
298
Normal
0.8
494
Normal
0.8
186
Normal
0.8
922
Normal
0.8
386
Normal
0.8
695
Tumor
0.7
356
Normal
0.7
132
Normal
0.7
414
Normal
0.7
526
Normal
0.7
358
Normal
0.7
868
Normal
0.7
938
Normal
0.7
328
Normal
0.7
568
Normal
0.7
448
Normal
0.7
1026
Normal
0.7
738
Normal
0.7
628
Normal
0.6
976
Normal
0.6
686
Normal
0.6
354
Normal
0.6
261
Tumor
0.6
572
Normal
0.6
314
Normal
0.6
716
Normal
0.6
232
Normal
0.6
1014
Normal
0.6
978
Normal
0.6
546
Normal
0.6
911
Tumor
0.6
428
Normal
0.6
126
Normal
0.5
516
Normal
0.5
672
Normal
0.5
218
Normal
0.5
884
Normal
0.5
916
Normal
0.5
563
Tumor
0.5
878
Normal
0.5
172
Normal
0.5
412
Normal
0.5
127
Tumor
0.5
432
Normal
0.5
1016
Normal
0.5
474
Normal
0.5
484
Normal
0.5
434
Normal
0.5
492
Normal
0.4
352
Normal
0.4
618
Normal
0.4
882
Normal
0.4
424
Normal
0.4
558
Normal
0.4
214
Normal
0.4
148
Normal
0.4
224
Normal
0.4
478
Normal
0.4
268
Normal
0.4
816
Normal
0.4
958
Normal
0.4
342
Normal
0.4
514
Normal
0.4
462
Normal
0.3
394
Normal
0.3
1045
Tumor
0.3
534
Normal
0.3
422
Normal
0.3
1028
Normal
0.3
874
Normal
0.3
192
Normal
0.3
627
Tumor
0.3
472
Normal
0.3
664
Normal
0.3
146
Normal
0.3
741
Tumor
0.3
112
Tumor
0.2
1041
Tumor
0.2
136
Normal
0.2
195
Tumor
0.2
685
Tumor
0.2
161
Tumor
0.2
915
Tumor
0.2
722
Normal
0.2
984
Normal
0.2
187
Tumor
0.2
615
Tumor
0.2
113
Tumor
0.2
513
Tumor
0.1
365
Tumor
0.1
415
Tumor
0.1
376
Normal
0.1
138
Normal
0.1
392
Normal
0.1
228
Normal
0.1
141
Tumor
0.1
327
Tumor
0.1
384
Normal
0.1
1043
Tumor
0.1
867
Tumor
0.0
617
Tumor
0.0
493
Tumor
0.0
488
Normal
0.0
368
Normal
0.0
353
Tumor
-0.1
465
Tumor
-0.1
917
Tumor
-0.1
433
Tumor
-0.1
785
Tumor
-0.1
363
Tumor
-0.1
451
Tumor
-0.1
467
Tumor
-0.1
191
Tumor
-0.1
217
Tumor
-0.1
491
Tumor
-0.1
435
Tumor
-0.2
745
Tumor
-0.2
641
Tumor
-0.2
383
Tumor
-0.2
863
Tumor
-0.2
498
Normal
-0.2
913
Tumor
-0.2
332
Normal
-0.3
515
Tumor
-0.3
124
Normal
-0.3
185
Tumor
-0.3
145
Tumor
-0.3
297
Tumor
-0.3
423
Tumor
-0.3
823
Tumor
-0.3
665
Tumor
-0.3
447
Tumor
-0.3
937
Tumor
-0.3
171
Tumor
-0.3
536
Normal
-0.3
713
Tumor
-0.4
421
Tumor
-0.4
445
Tumor
-0.4
267
Tumor
-0.4
977
Tumor
-0.4
231
Tumor
-0.4
557
Tumor
-0.4
715
Tumor
-0.4
461
Tumor
-0.4
277
Tumor
-0.4
391
Tumor
-0.4
944
Normal
-0.4
387
Tumor
-0.5
393
Tumor
-0.5
777
Tumor
-0.5
257
Tumor
-0.5
571
Tumor
-0.5
1031
Tumor
-0.5
357
Tumor
-0.5
271
Tumor
-0.5
573
Tumor
-0.5
343
Tumor
-0.5
413
Tumor
-0.5
341
Tumor
-0.6
647
Tumor
-0.6
724
Normal
-0.6
873
Tumor
-0.6
975
Tumor
-0.6
953
Tumor
-0.6
963
Tumor
-0.6
721
Tumor
-0.6
737
Tumor
-0.6
527
Tumor
-0.7
533
Tumor
-0.7
471
Tumor
-0.7
213
Tumor
-0.7
311
Tumor
-0.7
135
Tumor
-0.7
926
Normal
-0.7
223
Tumor
-0.7
1015
Tumor
-0.7
351
Tumor
-0.7
227
Tumor
-0.7
221
Tumor
-0.8
524
Normal
-0.8
567
Tumor
-0.8
395
Tumor
-0.8
137
Tumor
-0.8
865
Tumor
-0.8
671
Tumor
-0.8
697
Tumor
-0.8
444
Normal
-0.8
967
Tumor
-0.8
635
Tumor
-0.8
431
Tumor
-0.8
1027
Tumor
-0.8
883
Tumor
-0.8
553
Tumor
-0.8
473
Tumor
-0.8
463
Tumor
-0.8
427
Tumor
-0.9
545
Tumor
-0.9
814
Normal
-0.9
362
Normal
-0.9
123
Tumor
-0.9
517
Tumor
-0.9
411
Tumor
-0.9
487
Tumor
-0.9
355
Tumor
-0.9
483
Tumor
-0.9
125
Tumor
-0.9
147
Tumor
-1.0
425
Tumor
-1.0
313
Tumor
-1.0
663
Tumor
-1.1
923
Tumor
-1.1
331
Tumor
-1.1
817
Tumor
-1.1
881
Tumor
-1.1
367
Tumor
-1.1
385
Tumor
-1.1
743
Tumor
-1.1
497
Tumor
-1.1
1025
Tumor
-1.1
813
Tumor
-1.1
525
Tumor
-1.1
131
Tumor
-1.1
455
Tumor
-1.1
951
Tumor
-1.1
851
Tumor
-1.1
877
Tumor
-1.2
1021
Tumor
-1.2
443
Tumor
-1.2
375
Tumor
-1.2
661
Tumor
-1.2
283
Tumor
-1.2
361
Tumor
-1.2
943
Tumor
-1.3
921
Tumor
-1.3
1013
Tumor
-1.3
211
Tumor
-1.3
983
Tumor
-1.4
815
Tumor
-1.4
285
Tumor
-1.4
537
Tumor
-1.4
966
Normal
-1.5
925
Tumor
-1.6
523
Tumor
-1.6
535
Tumor
-1.8
957
Tumor
-2.2
965
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
