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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SFXN5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
60.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
58.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
51.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
36.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
30.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SFXN5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.8
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
55.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
47.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
45.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
39.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
38.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
37.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
35.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
29.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.9
615
Tumor
1.2
1027
Tumor
1.1
365
Tumor
1.1
1045
Tumor
1.1
922
Normal
0.9
465
Tumor
0.9
926
Normal
0.9
298
Normal
0.8
452
Normal
0.8
1046
Normal
0.8
944
Normal
0.8
128
Normal
0.7
648
Normal
0.7
618
Normal
0.7
466
Normal
0.7
358
Normal
0.7
426
Normal
0.7
616
Normal
0.7
278
Normal
0.7
332
Normal
0.7
424
Normal
0.7
513
Tumor
0.7
342
Normal
0.7
423
Tumor
0.6
925
Tumor
0.6
314
Normal
0.6
357
Tumor
0.6
636
Normal
0.6
328
Normal
0.6
162
Normal
0.6
388
Normal
0.6
428
Normal
0.6
414
Normal
0.6
448
Normal
0.6
756
Normal
0.6
114
Normal
0.6
111
Normal
0.6
436
Normal
0.6
964
Normal
0.6
132
Normal
0.6
698
Normal
0.6
468
Normal
0.6
642
Normal
0.6
344
Normal
0.6
172
Normal
0.6
464
Normal
0.6
564
Normal
0.6
218
Normal
0.6
866
Normal
0.5
232
Normal
0.5
482
Normal
0.5
186
Normal
0.5
222
Normal
0.5
862
Normal
0.5
746
Normal
0.5
214
Normal
0.5
786
Normal
0.5
918
Normal
0.5
666
Normal
0.5
526
Normal
0.5
664
Normal
0.5
824
Normal
0.5
874
Normal
0.5
488
Normal
0.5
534
Normal
0.5
858
Normal
0.5
422
Normal
0.5
568
Normal
0.5
258
Normal
0.5
286
Normal
0.5
142
Normal
0.5
976
Normal
0.5
368
Normal
0.5
416
Normal
0.5
361
Tumor
0.5
572
Normal
0.5
356
Normal
0.5
982
Normal
0.5
484
Normal
0.5
728
Normal
0.5
738
Normal
0.5
864
Normal
0.5
196
Normal
0.5
952
Normal
0.5
262
Normal
0.5
867
Tumor
0.5
884
Normal
0.5
1016
Normal
0.5
938
Normal
0.5
882
Normal
0.5
394
Normal
0.5
462
Normal
0.5
558
Normal
0.4
714
Normal
0.4
1026
Normal
0.4
816
Normal
0.4
148
Normal
0.4
563
Tumor
0.4
868
Normal
0.4
914
Normal
0.4
628
Normal
0.4
366
Normal
0.4
1014
Normal
0.4
392
Normal
0.4
956
Normal
0.4
873
Tumor
0.4
742
Normal
0.4
494
Normal
0.4
481
Tumor
0.4
878
Normal
0.4
376
Normal
0.4
953
Tumor
0.4
518
Normal
0.4
528
Normal
0.4
396
Normal
0.4
722
Normal
0.4
446
Normal
0.4
662
Normal
0.4
912
Normal
0.4
1032
Normal
0.4
136
Normal
0.4
818
Normal
0.4
364
Normal
0.4
924
Normal
0.4
571
Tumor
0.4
716
Normal
0.4
456
Normal
0.3
955
Tumor
0.3
514
Normal
0.3
954
Normal
0.3
1022
Normal
0.3
432
Normal
0.3
138
Normal
0.3
474
Normal
0.3
554
Normal
0.3
546
Normal
0.3
1044
Normal
0.3
778
Normal
0.3
126
Normal
0.3
696
Normal
0.3
744
Normal
0.3
978
Normal
0.3
785
Tumor
0.3
412
Normal
0.3
435
Tumor
0.3
352
Normal
0.3
574
Normal
0.3
212
Normal
0.3
312
Normal
0.3
284
Normal
0.3
672
Normal
0.3
224
Normal
0.3
124
Normal
0.3
968
Normal
0.3
723
Tumor
0.2
515
Tumor
0.2
362
Normal
0.2
272
Normal
0.2
354
Normal
0.2
472
Normal
0.2
386
Normal
0.2
686
Normal
0.2
958
Normal
0.2
755
Tumor
0.2
966
Normal
0.2
421
Tumor
0.2
393
Tumor
0.2
146
Normal
0.2
852
Normal
0.1
1028
Normal
0.1
981
Tumor
0.1
863
Tumor
0.1
1042
Normal
0.1
268
Normal
0.1
188
Normal
0.1
145
Tumor
0.1
113
Tumor
0.1
384
Normal
0.1
228
Normal
0.1
538
Normal
0.1
478
Normal
0.1
227
Tumor
0.0
524
Normal
0.0
434
Normal
0.0
516
Normal
0.0
665
Tumor
0.0
267
Tumor
0.0
127
Tumor
0.0
171
Tumor
0.0
411
Tumor
-0.1
916
Normal
-0.1
492
Normal
-0.1
915
Tumor
-0.1
445
Tumor
-0.1
433
Tumor
-0.1
883
Tumor
-0.1
451
Tumor
-0.1
444
Normal
-0.1
741
Tumor
-0.2
557
Tumor
-0.2
415
Tumor
-0.2
427
Tumor
-0.2
537
Tumor
-0.2
745
Tumor
-0.2
1043
Tumor
-0.2
217
Tumor
-0.2
984
Normal
-0.2
641
Tumor
-0.2
857
Tumor
-0.2
161
Tumor
-0.2
913
Tumor
-0.2
137
Tumor
-0.2
498
Normal
-0.2
363
Tumor
-0.2
461
Tumor
-0.2
187
Tumor
-0.3
261
Tumor
-0.3
477
Tumor
-0.3
413
Tumor
-0.3
191
Tumor
-0.3
112
Tumor
-0.3
685
Tumor
-0.3
715
Tumor
-0.3
536
Normal
-0.3
487
Tumor
-0.3
192
Normal
-0.3
341
Tumor
-0.3
695
Tumor
-0.3
257
Tumor
-0.3
195
Tumor
-0.3
353
Tumor
-0.4
327
Tumor
-0.4
617
Tumor
-0.4
1015
Tumor
-0.4
367
Tumor
-0.4
1041
Tumor
-0.4
141
Tumor
-0.4
721
Tumor
-0.4
815
Tumor
-0.4
443
Tumor
-0.4
231
Tumor
-0.4
431
Tumor
-0.4
185
Tumor
-0.4
567
Tumor
-0.4
635
Tumor
-0.4
713
Tumor
-0.4
387
Tumor
-0.4
727
Tumor
-0.4
517
Tumor
-0.5
911
Tumor
-0.5
383
Tumor
-0.5
861
Tumor
-0.5
967
Tumor
-0.5
391
Tumor
-0.5
425
Tumor
-0.5
851
Tumor
-0.5
525
Tumor
-0.5
1013
Tumor
-0.5
814
Normal
-0.5
355
Tumor
-0.6
491
Tumor
-0.6
523
Tumor
-0.6
1025
Tumor
-0.6
877
Tumor
-0.6
535
Tumor
-0.6
533
Tumor
-0.6
135
Tumor
-0.6
493
Tumor
-0.6
221
Tumor
-0.6
963
Tumor
-0.6
663
Tumor
-0.6
823
Tumor
-0.7
777
Tumor
-0.7
471
Tumor
-0.7
297
Tumor
-0.7
937
Tumor
-0.7
313
Tumor
-0.7
483
Tumor
-0.7
277
Tumor
-0.7
671
Tumor
-0.7
351
Tumor
-0.7
527
Tumor
-0.8
223
Tumor
-0.8
447
Tumor
-0.8
285
Tumor
-0.8
951
Tumor
-0.8
473
Tumor
-0.8
813
Tumor
-0.8
463
Tumor
-0.8
497
Tumor
-0.8
553
Tumor
-0.8
213
Tumor
-0.9
375
Tumor
-0.9
343
Tumor
-0.9
467
Tumor
-0.9
147
Tumor
-0.9
881
Tumor
-0.9
647
Tumor
-0.9
1031
Tumor
-0.9
943
Tumor
-0.9
271
Tumor
-1.0
923
Tumor
-1.0
737
Tumor
-1.0
977
Tumor
-1.0
817
Tumor
-1.0
331
Tumor
-1.0
455
Tumor
-1.0
125
Tumor
-1.0
975
Tumor
-1.0
724
Normal
-1.0
385
Tumor
-1.0
965
Tumor
-1.1
921
Tumor
-1.1
573
Tumor
-1.1
917
Tumor
-1.1
983
Tumor
-1.1
661
Tumor
-1.2
957
Tumor
-1.2
545
Tumor
-1.2
395
Tumor
-1.2
743
Tumor
-1.2
123
Tumor
-1.3
283
Tumor
-1.3
1021
Tumor
-1.3
311
Tumor
-1.3
131
Tumor
-1.4
865
Tumor
-1.4
697
Tumor
-1.4
211
Tumor
-1.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
