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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TPRKB is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
73.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
68.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
62.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
62.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
62.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
60.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
60.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
54.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
51.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
50.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
49.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
48.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
46.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
45.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
45.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
44.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
44.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
40.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
40.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
39.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
39.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
38.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
38.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
37.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
37.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
37.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
36.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
34.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
33.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
30.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
30.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
29.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
28.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
27.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
24.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
24.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TPRKB is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.7
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
65.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
62.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
58.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
51.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
50.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
45.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
45.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
45.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
45.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
43.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
41.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
41.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
40.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
38.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
38.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
32.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
24.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.0
813
Tumor
0.7
527
Tumor
0.7
663
Tumor
0.7
863
Tumor
0.7
557
Tumor
0.6
277
Tumor
0.6
911
Tumor
0.6
1015
Tumor
0.6
473
Tumor
0.5
977
Tumor
0.5
777
Tumor
0.5
461
Tumor
0.5
513
Tumor
0.5
431
Tumor
0.4
481
Tumor
0.4
497
Tumor
0.4
1027
Tumor
0.4
445
Tumor
0.4
425
Tumor
0.4
227
Tumor
0.4
1045
Tumor
0.3
112
Tumor
0.3
857
Tumor
0.3
955
Tumor
0.3
865
Tumor
0.3
913
Tumor
0.3
741
Tumor
0.3
433
Tumor
0.3
427
Tumor
0.3
715
Tumor
0.3
723
Tumor
0.2
383
Tumor
0.2
423
Tumor
0.2
482
Normal
0.2
313
Tumor
0.2
728
Normal
0.2
466
Normal
0.2
483
Tumor
0.2
627
Tumor
0.2
465
Tumor
0.2
137
Tumor
0.2
742
Normal
0.2
617
Tumor
0.2
267
Tumor
0.2
491
Tumor
0.2
953
Tumor
0.2
231
Tumor
0.2
746
Normal
0.2
881
Tumor
0.2
395
Tumor
0.2
128
Normal
0.2
698
Normal
0.2
737
Tumor
0.2
478
Normal
0.1
665
Tumor
0.1
824
Normal
0.1
615
Tumor
0.1
648
Normal
0.1
661
Tumor
0.1
387
Tumor
0.1
814
Normal
0.1
285
Tumor
0.1
474
Normal
0.1
745
Tumor
0.1
261
Tumor
0.1
697
Tumor
0.1
721
Tumor
0.1
471
Tumor
0.1
867
Tumor
0.1
571
Tumor
0.1
388
Normal
0.1
394
Normal
0.1
738
Normal
0.1
984
Normal
0.1
185
Tumor
0.1
868
Normal
0.1
314
Normal
0.1
866
Normal
0.1
462
Normal
0.1
785
Tumor
0.1
724
Normal
0.1
883
Tumor
0.1
744
Normal
0.1
327
Tumor
0.1
477
Tumor
0.1
873
Tumor
0.1
713
Tumor
0.1
515
Tumor
0.1
664
Normal
0.1
864
Normal
0.1
472
Normal
0.1
467
Tumor
0.1
666
Normal
0.1
498
Normal
0.1
686
Normal
0.1
141
Tumor
0.1
714
Normal
0.1
221
Tumor
0.1
755
Tumor
0.0
283
Tumor
0.0
142
Normal
0.0
223
Tumor
0.0
878
Normal
0.0
298
Normal
0.0
1028
Normal
0.0
963
Tumor
0.0
357
Tumor
0.0
432
Normal
0.0
257
Tumor
0.0
131
Tumor
0.0
912
Normal
0.0
965
Tumor
0.0
944
Normal
0.0
196
Normal
0.0
212
Normal
0.0
722
Normal
0.0
484
Normal
0.0
111
Normal
0.0
861
Tumor
0.0
135
Tumor
0.0
136
Normal
0.0
975
Tumor
0.0
696
Normal
0.0
228
Normal
0.0
786
Normal
0.0
365
Tumor
0.0
635
Tumor
0.0
342
Normal
0.0
114
Normal
0.0
444
Normal
0.0
222
Normal
0.0
214
Normal
0.0
695
Tumor
0.0
391
Tumor
0.0
858
Normal
0.0
328
Normal
0.0
392
Normal
0.0
487
Tumor
0.0
268
Normal
0.0
1026
Normal
0.0
1013
Tumor
0.0
952
Normal
0.0
448
Normal
0.0
411
Tumor
0.0
1044
Normal
0.0
983
Tumor
0.0
356
Normal
0.0
716
Normal
0.0
951
Tumor
0.0
414
Normal
0.0
1014
Normal
0.0
436
Normal
0.0
446
Normal
0.0
451
Tumor
0.0
493
Tumor
0.0
954
Normal
0.0
421
Tumor
0.0
1032
Normal
0.0
435
Tumor
0.0
396
Normal
0.0
1041
Tumor
0.0
514
Normal
0.0
224
Normal
0.0
938
Normal
0.0
422
Normal
0.0
917
Tumor
0.0
132
Normal
0.0
424
Normal
-0.1
488
Normal
-0.1
662
Normal
-0.1
161
Tumor
-0.1
862
Normal
-0.1
385
Tumor
-0.1
976
Normal
-0.1
147
Tumor
-0.1
778
Normal
-0.1
914
Normal
-0.1
981
Tumor
-0.1
311
Tumor
-0.1
1042
Normal
-0.1
1021
Tumor
-0.1
816
Normal
-0.1
286
Normal
-0.1
882
Normal
-0.1
1043
Tumor
-0.1
815
Tumor
-0.1
937
Tumor
-0.1
554
Normal
-0.1
191
Tumor
-0.1
494
Normal
-0.1
1046
Normal
-0.1
756
Normal
-0.1
434
Normal
-0.1
672
Normal
-0.1
546
Normal
-0.1
641
Tumor
-0.1
284
Normal
-0.1
332
Normal
-0.1
376
Normal
-0.1
278
Normal
-0.1
162
Normal
-0.1
195
Tumor
-0.1
468
Normal
-0.1
213
Tumor
-0.1
386
Normal
-0.1
188
Normal
-0.1
172
Normal
-0.1
1016
Normal
-0.1
258
Normal
-0.1
534
Normal
-0.1
526
Normal
-0.1
1022
Normal
-0.1
192
Normal
-0.1
447
Tumor
-0.1
628
Normal
-0.1
393
Tumor
-0.1
647
Tumor
-0.1
884
Normal
-0.1
148
Normal
-0.1
616
Normal
-0.1
533
Tumor
-0.1
463
Tumor
-0.1
567
Tumor
-0.1
455
Tumor
-0.1
727
Tumor
-0.1
353
Tumor
-0.2
978
Normal
-0.2
343
Tumor
-0.2
146
Normal
-0.2
217
Tumor
-0.2
817
Tumor
-0.2
413
Tumor
-0.2
818
Normal
-0.2
956
Normal
-0.2
297
Tumor
-0.2
262
Normal
-0.2
516
Normal
-0.2
518
Normal
-0.2
443
Tumor
-0.2
312
Normal
-0.2
186
Normal
-0.2
545
Tumor
-0.2
368
Normal
-0.2
492
Normal
-0.2
428
Normal
-0.2
636
Normal
-0.2
127
Tumor
-0.2
967
Tumor
-0.2
125
Tumor
-0.2
528
Normal
-0.2
456
Normal
-0.2
272
Normal
-0.2
452
Normal
-0.2
523
Tumor
-0.2
415
Tumor
-0.2
412
Normal
-0.2
361
Tumor
-0.2
426
Normal
-0.2
138
Normal
-0.2
416
Normal
-0.2
537
Tumor
-0.2
524
Normal
-0.2
218
Normal
-0.2
366
Normal
-0.2
232
Normal
-0.2
924
Normal
-0.2
921
Tumor
-0.2
464
Normal
-0.2
362
Normal
-0.2
535
Tumor
-0.2
384
Normal
-0.2
926
Normal
-0.2
968
Normal
-0.2
874
Normal
-0.2
918
Normal
-0.2
851
Tumor
-0.3
364
Normal
-0.3
123
Tumor
-0.3
525
Tumor
-0.3
743
Tumor
-0.3
923
Tumor
-0.3
1031
Tumor
-0.3
187
Tumor
-0.3
642
Normal
-0.3
966
Normal
-0.3
271
Tumor
-0.3
358
Normal
-0.3
124
Normal
-0.3
375
Tumor
-0.3
126
Normal
-0.3
982
Normal
-0.3
964
Normal
-0.3
363
Tumor
-0.3
344
Normal
-0.3
922
Normal
-0.3
558
Normal
-0.3
618
Normal
-0.3
113
Tumor
-0.3
958
Normal
-0.3
538
Normal
-0.3
145
Tumor
-0.3
671
Tumor
-0.4
925
Tumor
-0.4
852
Normal
-0.4
171
Tumor
-0.4
352
Normal
-0.4
563
Tumor
-0.4
536
Normal
-0.4
916
Normal
-0.4
355
Tumor
-0.4
553
Tumor
-0.5
574
Normal
-0.5
877
Tumor
-0.5
943
Tumor
-0.5
572
Normal
-0.5
564
Normal
-0.5
367
Tumor
-0.5
568
Normal
-0.5
211
Tumor
-0.5
354
Normal
-0.5
331
Tumor
-0.5
573
Tumor
-0.5
517
Tumor
-0.6
823
Tumor
-0.6
957
Tumor
-0.6
341
Tumor
-0.6
915
Tumor
-0.7
1025
Tumor
-0.7
351
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
