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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.4
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
101.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
99.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
90.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
87.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
73.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
71.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
67.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
66.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
66.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
61.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
61.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
61.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
59.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
59.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
58.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
57.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
56.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
56.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
56.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
55.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
55.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
55.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
54.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
53.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
53.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
53.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
53.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
53.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
53.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
51.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
51.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
50.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
49.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
48.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
47.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
47.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
47.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
46.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
46.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
46.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
45.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
45.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
45.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
45.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
45.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
45.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
45.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
43.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
43.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
43.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
43.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
42.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
42.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
42.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
42.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
42.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
42.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
42.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
42.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
42.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
41.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
41.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
41.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
41.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
40.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
40.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
40.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
39.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
39.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
39.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
39.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
38.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
38.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
37.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
37.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
37.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
37.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
37.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
35.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
35.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
35.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
35.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
34.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
34.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
34.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
34.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
34.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
33.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
32.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
32.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
31.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
28.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.5
411
Tumor
1.3
231
Tumor
1.3
227
Tumor
1.2
435
Tumor
1.2
1041
Tumor
1.2
967
Tumor
1.2
537
Tumor
1.0
477
Tumor
1.0
525
Tumor
1.0
713
Tumor
0.9
865
Tumor
0.9
557
Tumor
0.9
957
Tumor
0.9
361
Tumor
0.9
741
Tumor
0.9
1013
Tumor
0.8
951
Tumor
0.8
171
Tumor
0.8
533
Tumor
0.8
553
Tumor
0.8
823
Tumor
0.8
393
Tumor
0.8
745
Tumor
0.8
965
Tumor
0.8
571
Tumor
0.7
423
Tumor
0.7
861
Tumor
0.7
123
Tumor
0.7
357
Tumor
0.7
685
Tumor
0.7
363
Tumor
0.7
267
Tumor
0.7
953
Tumor
0.7
1025
Tumor
0.7
483
Tumor
0.7
567
Tumor
0.7
367
Tumor
0.7
883
Tumor
0.6
257
Tumor
0.6
981
Tumor
0.6
663
Tumor
0.6
665
Tumor
0.6
355
Tumor
0.6
327
Tumor
0.5
695
Tumor
0.5
915
Tumor
0.5
195
Tumor
0.5
937
Tumor
0.5
427
Tumor
0.5
221
Tumor
0.5
271
Tumor
0.5
223
Tumor
0.5
465
Tumor
0.5
1021
Tumor
0.5
743
Tumor
0.5
867
Tumor
0.5
331
Tumor
0.5
353
Tumor
0.5
977
Tumor
0.4
351
Tumor
0.4
387
Tumor
0.4
715
Tumor
0.4
913
Tumor
0.4
983
Tumor
0.4
145
Tumor
0.4
365
Tumor
0.4
697
Tumor
0.4
127
Tumor
0.4
724
Normal
0.4
755
Tumor
0.4
147
Tumor
0.4
213
Tumor
0.4
877
Tumor
0.3
963
Tumor
0.3
497
Tumor
0.3
635
Tumor
0.3
467
Tumor
0.3
277
Tumor
0.3
923
Tumor
0.3
1031
Tumor
0.3
493
Tumor
0.3
671
Tumor
0.3
491
Tumor
0.3
721
Tumor
0.2
385
Tumor
0.2
395
Tumor
0.2
573
Tumor
0.2
647
Tumor
0.2
641
Tumor
0.2
313
Tumor
0.2
131
Tumor
0.2
471
Tumor
0.2
727
Tumor
0.2
815
Tumor
0.2
187
Tumor
0.2
451
Tumor
0.2
375
Tumor
0.2
517
Tumor
0.2
463
Tumor
0.2
911
Tumor
0.2
112
Tumor
0.1
881
Tumor
0.1
431
Tumor
0.1
433
Tumor
0.1
487
Tumor
0.1
523
Tumor
0.1
297
Tumor
0.1
413
Tumor
0.1
261
Tumor
0.1
285
Tumor
0.1
481
Tumor
0.1
528
Normal
0.1
817
Tumor
0.1
482
Normal
0.1
926
Normal
0.1
258
Normal
0.1
514
Normal
0.1
527
Tumor
0.1
868
Normal
0.1
272
Normal
0.1
696
Normal
0.0
535
Tumor
0.0
1043
Tumor
0.0
617
Tumor
0.0
526
Normal
0.0
474
Normal
0.0
191
Tumor
0.0
661
Tumor
0.0
857
Tumor
0.0
534
Normal
0.0
516
Normal
0.0
232
Normal
0.0
615
Tumor
0.0
436
Normal
0.0
546
Normal
0.0
341
Tumor
0.0
785
Tumor
0.0
356
Normal
0.0
132
Normal
0.0
466
Normal
0.0
416
Normal
0.0
728
Normal
0.0
777
Tumor
0.0
964
Normal
0.0
554
Normal
0.0
1014
Normal
0.0
464
Normal
0.0
1032
Normal
0.0
862
Normal
0.0
851
Tumor
0.0
328
Normal
-0.1
364
Normal
-0.1
722
Normal
-0.1
161
Tumor
-0.1
1042
Normal
-0.1
358
Normal
-0.1
958
Normal
-0.1
572
Normal
-0.1
944
Normal
-0.1
136
Normal
-0.1
642
Normal
-0.1
925
Tumor
-0.1
866
Normal
-0.1
447
Tumor
-0.1
472
Normal
-0.1
462
Normal
-0.1
391
Tumor
-0.1
912
Normal
-0.1
916
Normal
-0.1
816
Normal
-0.1
148
Normal
-0.1
723
Tumor
-0.1
212
Normal
-0.1
312
Normal
-0.1
616
Normal
-0.1
113
Tumor
-0.1
298
Normal
-0.1
278
Normal
-0.1
456
Normal
-0.1
975
Tumor
-0.1
211
Tumor
-0.1
1028
Normal
-0.1
1022
Normal
-0.1
824
Normal
-0.1
412
Normal
-0.1
858
Normal
-0.1
484
Normal
-0.1
188
Normal
-0.1
1026
Normal
-0.1
952
Normal
-0.1
518
Normal
-0.1
114
Normal
-0.1
864
Normal
-0.1
383
Tumor
-0.1
714
Normal
-0.1
162
Normal
-0.1
366
Normal
-0.1
128
Normal
-0.2
738
Normal
-0.2
873
Tumor
-0.2
648
Normal
-0.2
284
Normal
-0.2
564
Normal
-0.2
982
Normal
-0.2
314
Normal
-0.2
432
Normal
-0.2
742
Normal
-0.2
618
Normal
-0.2
185
Tumor
-0.2
1015
Tumor
-0.2
135
Tumor
-0.2
172
Normal
-0.2
415
Tumor
-0.2
196
Normal
-0.2
228
Normal
-0.2
1046
Normal
-0.2
878
Normal
-0.2
978
Normal
-0.2
956
Normal
-0.2
268
Normal
-0.2
666
Normal
-0.2
141
Tumor
-0.2
662
Normal
-0.2
874
Normal
-0.2
716
Normal
-0.2
214
Normal
-0.2
1016
Normal
-0.2
428
Normal
-0.2
545
Tumor
-0.2
914
Normal
-0.2
954
Normal
-0.2
224
Normal
-0.2
461
Tumor
-0.2
222
Normal
-0.3
446
Normal
-0.3
664
Normal
-0.3
756
Normal
-0.3
628
Normal
-0.3
388
Normal
-0.3
125
Tumor
-0.3
376
Normal
-0.3
452
Normal
-0.3
494
Normal
-0.3
918
Normal
-0.3
362
Normal
-0.3
343
Tumor
-0.3
955
Tumor
-0.3
943
Tumor
-0.3
422
Normal
-0.3
778
Normal
-0.3
396
Normal
-0.3
922
Normal
-0.3
468
Normal
-0.3
686
Normal
-0.3
746
Normal
-0.3
342
Normal
-0.3
938
Normal
-0.3
126
Normal
-0.3
444
Normal
-0.3
786
Normal
-0.3
882
Normal
-0.3
884
Normal
-0.3
568
Normal
-0.3
968
Normal
-0.3
976
Normal
-0.3
434
Normal
-0.3
424
Normal
-0.3
137
Tumor
-0.3
311
Tumor
-0.3
286
Normal
-0.3
1045
Tumor
-0.3
627
Tumor
-0.3
636
Normal
-0.4
111
Normal
-0.4
448
Normal
-0.4
262
Normal
-0.4
737
Tumor
-0.4
368
Normal
-0.4
344
Normal
-0.4
386
Normal
-0.4
852
Normal
-0.4
574
Normal
-0.4
924
Normal
-0.4
352
Normal
-0.4
426
Normal
-0.4
984
Normal
-0.4
498
Normal
-0.4
524
Normal
-0.4
414
Normal
-0.4
478
Normal
-0.4
146
Normal
-0.4
142
Normal
-0.4
455
Tumor
-0.4
138
Normal
-0.4
217
Tumor
-0.4
354
Normal
-0.4
283
Tumor
-0.4
445
Tumor
-0.4
332
Normal
-0.4
698
Normal
-0.4
818
Normal
-0.4
186
Normal
-0.5
966
Normal
-0.5
124
Normal
-0.5
558
Normal
-0.5
392
Normal
-0.5
917
Tumor
-0.5
488
Normal
-0.5
536
Normal
-0.5
538
Normal
-0.5
443
Tumor
-0.5
515
Tumor
-0.5
394
Normal
-0.5
814
Normal
-0.5
513
Tumor
-0.5
813
Tumor
-0.6
563
Tumor
-0.6
421
Tumor
-0.6
425
Tumor
-0.6
384
Normal
-0.6
672
Normal
-0.6
218
Normal
-0.7
1044
Normal
-0.7
492
Normal
-0.7
1027
Tumor
-0.7
192
Normal
-0.7
863
Tumor
-0.9
744
Normal
-0.9
921
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
