MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.2 nTPM
HPA Brain:13.9 nTPM
GTEx:8.2 nTPM
FANTOM5:12.3 Scaled Tags Per Million
Pig:13.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.8
1830 Male, age 51, unknown 14.1
1870 Female, age 42, unknown 14.0
2019 Male, age 18, unknown 13.9
1833 Male, age 53, unknown 12.9
2219 Male, age 76, both hemispheres 12.9
2666 Male, age 74, left hemisphere 12.6
2828 Female, age 72, unknown 12.4
2411 Female, age 72, unknown 12.2
1827 Male, age 72, unknown 12.1
2586 Male, age 75, left hemisphere 11.5
Dorsal raphe nucleus
nTPM: 11.1
2750 Male, age 76, both hemispheres 12.5
2047 Male, age 72, unknown 11.4
2016 Female, age 72, unknown 11.3
1828 Male, age 53, unknown 10.8
2298 Female, age 72, unknown 9.4
Inferior colliculus
nTPM: 12.4
1890 Male, age 53, unknown 13.3
2097 Female, age 72, unknown 12.2
1848 Female, age 42, unknown 12.1
2849 Male, age 72, unknown 12.1
Median raphe nucleus
nTPM: 11.7
2220 Male, age 76, midline 11.7
Periaquaductal grey, anterior
nTPM: 11.5
1947 Male, age 18, unknown 12.5
2502 Female, age 75, unknown 11.9
1795 Male, age 51, unknown 10.1
Periaquaductal grey, dorsal
nTPM: 11.5
2464 Female, age 72, unknown 12.8
1831 Male, age 72, unknown 11.9
2850 Male, age 76, both hemispheres 11.4
1840 Male, age 53, unknown 10.0
Periaquaductal grey, lateral
nTPM: 11.4
2140 Male, age 76, both hemispheres 11.8
2053 Male, age 18, unknown 11.7
2272 Male, age 74, both hemispheres 10.7
Pretectal area
nTPM: 12.2
2316 Male, age 76, right hemisphere 14.1
2407 Male, age 75, both hemispheres 13.2
2007 Male, age 72, unknown 12.9
2667 Female, age 75, unknown 12.9
2825 Male, age 18, unknown 12.8
1815 Male, age 53, unknown 12.7
1816 Male, age 51, unknown 11.7
1817 Female, age 42, unknown 11.7
2273 Male, age 74, both hemispheres 11.0
2224 Female, age 72, unknown 10.9
1944 Female, age 72, unknown 10.7
Red nucleus
nTPM: 13.9
1904 Male, age 53, unknown 16.4
2588 Male, age 74, left hemisphere 15.0
2503 Female, age 72, unknown 14.7
2823 Male, age 76, right hemisphere 14.6
2584 Male, age 75, left hemisphere 14.2
2227 Male, age 72, unknown 13.8
1865 Male, age 51, unknown 13.7
2725 Female, age 75, unknown 13.5
1954 Female, age 42, unknown 13.1
2769 Male, age 72, unknown 12.8
2785 Male, age 18, unknown 12.8
1821 Female, age 72, unknown 12.7
Substantia nigra
nTPM: 11.6
2409 Female, age 72, unknown 13.8
1941 Male, age 53, unknown 12.8
2583 Male, age 75, right hemisphere 12.8
2241 Male, age 72, unknown 12.2
2590 Female, age 75, unknown 11.9
1889 Female, age 72, unknown 11.2
1851 Male, age 51, unknown 11.1
2665 Male, age 74, both hemispheres 10.3
2699 Male, age 18, unknown 10.2
1916 Female, age 42, unknown 9.8
Superior colliculus
nTPM: 12.5
1895 Male, age 76, right hemisphere 16.0
1839 Male, age 51, unknown 14.4
1913 Female, age 42, unknown 13.0
2087 Female, age 72, unknown 12.4
2664 Male, age 75, both hemispheres 12.4
1995 Male, age 72, unknown 12.3
2261 Male, age 18, unknown 11.9
2668 Female, age 75, unknown 11.4
2587 Male, age 74, left hemisphere 10.9
1796 Male, age 53, unknown 10.3
Ventral tegmental area
nTPM: 11.5
2223 Female, age 72, unknown 13.1
2218 Male, age 76, both hemispheres 11.7
2410 Female, age 72, unknown 11.2
1915 Female, age 42, unknown 11.1
1942 Male, age 51, unknown 11.1
2021 Male, age 53, unknown 11.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.2
Samples: 139

Max nTPM: 17.9
Min nTPM: 2.3
Std nTPM: 2.8
Median nTPM: 7.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 17.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 17.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 17.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 14.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 13.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 13.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 13.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 12.6
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 12.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 12.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 12.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.3
FF:10158-103A5 76 years, female 12.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.7
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.6
Sample A Female 10.6
Sample B Female 12.1
Sample C Male 14.2
Sample D Male 13.7
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 14.1
Min nTPM: 9.8
Sample A Female 9.8
Sample B Female 14.1
Sample C Male 11.3
Sample D Male 13.4
Periaqueductal gray
nTPM: 13.5
Samples: 3

Max nTPM: 14.1
Min nTPM: 12.6
Sample B Female 14.1
Sample C Male 12.6
Sample D Male 13.7
Superior colliculi
nTPM: 10.4
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.7
Sample A Female 9.9
Sample B Female 9.7
Sample C Male 10.6
Sample D Male 11.5

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