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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CIAO1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
52.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
43.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
42.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
30.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
27.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CIAO1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.0
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
51.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
48.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
38.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
37.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
36.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
34.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
0.6
695
Tumor
0.6
257
Tumor
0.6
1013
Tumor
0.6
435
Tumor
0.5
1043
Tumor
0.5
123
Tumor
0.5
411
Tumor
0.5
1025
Tumor
0.5
957
Tumor
0.4
1027
Tumor
0.4
567
Tumor
0.4
313
Tumor
0.4
537
Tumor
0.4
685
Tumor
0.4
952
Normal
0.4
746
Normal
0.4
357
Tumor
0.3
953
Tumor
0.3
477
Tumor
0.3
1021
Tumor
0.3
342
Normal
0.3
554
Normal
0.3
445
Tumor
0.3
387
Tumor
0.3
981
Tumor
0.3
557
Tumor
0.2
867
Tumor
0.2
615
Tumor
0.2
967
Tumor
0.2
553
Tumor
0.2
523
Tumor
0.2
363
Tumor
0.2
452
Normal
0.2
393
Tumor
0.2
436
Normal
0.2
915
Tumor
0.2
937
Tumor
0.2
124
Normal
0.2
965
Tumor
0.2
161
Tumor
0.2
231
Tumor
0.2
925
Tumor
0.2
966
Normal
0.2
376
Normal
0.2
171
Tumor
0.1
951
Tumor
0.1
355
Tumor
0.1
186
Normal
0.1
141
Tumor
0.1
923
Tumor
0.1
366
Normal
0.1
128
Normal
0.1
423
Tumor
0.1
924
Normal
0.1
341
Tumor
0.1
147
Tumor
0.1
861
Tumor
0.1
742
Normal
0.1
955
Tumor
0.1
267
Tumor
0.1
114
Normal
0.1
538
Normal
0.1
473
Tumor
0.1
662
Normal
0.1
412
Normal
0.1
344
Normal
0.1
185
Tumor
0.1
755
Tumor
0.1
648
Normal
0.1
533
Tumor
0.1
1028
Normal
0.1
461
Tumor
0.1
1041
Tumor
0.1
271
Tumor
0.1
232
Normal
0.1
443
Tumor
0.1
738
Normal
0.1
518
Normal
0.1
298
Normal
0.1
525
Tumor
0.1
218
Normal
0.1
392
Normal
0.1
715
Tumor
0.0
137
Tumor
0.0
278
Normal
0.0
546
Normal
0.0
1026
Normal
0.0
785
Tumor
0.0
111
Normal
0.0
261
Tumor
0.0
914
Normal
0.0
571
Tumor
0.0
744
Normal
0.0
741
Tumor
0.0
874
Normal
0.0
493
Tumor
0.0
862
Normal
0.0
272
Normal
0.0
217
Tumor
0.0
664
Normal
0.0
277
Tumor
0.0
448
Normal
0.0
465
Tumor
0.0
474
Normal
0.0
878
Normal
0.0
214
Normal
0.0
375
Tumor
0.0
956
Normal
0.0
434
Normal
0.0
262
Normal
0.0
697
Tumor
0.0
698
Normal
0.0
368
Normal
0.0
671
Tumor
0.0
483
Tumor
0.0
487
Tumor
0.0
361
Tumor
0.0
113
Tumor
0.0
713
Tumor
0.0
268
Normal
0.0
635
Tumor
0.0
222
Normal
0.0
661
Tumor
0.0
883
Tumor
0.0
213
Tumor
0.0
367
Tumor
0.0
666
Normal
0.0
386
Normal
0.0
983
Tumor
0.0
873
Tumor
0.0
877
Tumor
0.0
258
Normal
0.0
492
Normal
0.0
471
Tumor
0.0
391
Tumor
-0.1
125
Tumor
-0.1
358
Normal
-0.1
395
Tumor
-0.1
778
Normal
-0.1
286
Normal
-0.1
365
Tumor
-0.1
491
Tumor
-0.1
737
Tumor
-0.1
227
Tumor
-0.1
362
Normal
-0.1
466
Normal
-0.1
513
Tumor
-0.1
663
Tumor
-0.1
283
Tumor
-0.1
135
Tumor
-0.1
132
Normal
-0.1
285
Tumor
-0.1
331
Tumor
-0.1
574
Normal
-0.1
463
Tumor
-0.1
484
Normal
-0.1
921
Tumor
-0.1
223
Tumor
-0.1
1031
Tumor
-0.1
686
Normal
-0.1
211
Tumor
-0.1
817
Tumor
-0.1
727
Tumor
-0.1
456
Normal
-0.1
433
Tumor
-0.1
451
Tumor
-0.1
1045
Tumor
-0.1
813
Tumor
-0.1
343
Tumor
-0.1
516
Normal
-0.1
332
Normal
-0.1
422
Normal
-0.1
975
Tumor
-0.1
421
Tumor
-0.1
446
Normal
-0.1
426
Normal
-0.1
385
Tumor
-0.2
517
Tumor
-0.2
816
Normal
-0.2
714
Normal
-0.2
172
Normal
-0.2
911
Tumor
-0.2
545
Tumor
-0.2
472
Normal
-0.2
857
Tumor
-0.2
142
Normal
-0.2
1015
Tumor
-0.2
494
Normal
-0.2
297
Tumor
-0.2
696
Normal
-0.2
396
Normal
-0.2
672
Normal
-0.2
162
Normal
-0.2
138
Normal
-0.2
462
Normal
-0.2
351
Tumor
-0.2
723
Tumor
-0.2
431
Tumor
-0.2
131
Tumor
-0.2
312
Normal
-0.2
851
Tumor
-0.2
721
Tumor
-0.2
938
Normal
-0.2
526
Normal
-0.2
527
Tumor
-0.2
455
Tumor
-0.2
136
Normal
-0.2
535
Tumor
-0.2
112
Tumor
-0.2
716
Normal
-0.2
388
Normal
-0.2
568
Normal
-0.2
524
Normal
-0.2
482
Normal
-0.2
464
Normal
-0.2
728
Normal
-0.2
146
Normal
-0.2
468
Normal
-0.2
228
Normal
-0.2
963
Tumor
-0.2
196
Normal
-0.2
416
Normal
-0.2
515
Tumor
-0.2
394
Normal
-0.2
1016
Normal
-0.2
188
Normal
-0.2
1022
Normal
-0.2
432
Normal
-0.2
126
Normal
-0.2
823
Tumor
-0.3
968
Normal
-0.3
327
Tumor
-0.3
627
Tumor
-0.3
944
Normal
-0.3
815
Tumor
-0.3
536
Normal
-0.3
977
Tumor
-0.3
864
Normal
-0.3
467
Tumor
-0.3
127
Tumor
-0.3
356
Normal
-0.3
868
Normal
-0.3
488
Normal
-0.3
982
Normal
-0.3
618
Normal
-0.3
383
Tumor
-0.3
284
Normal
-0.3
212
Normal
-0.3
881
Tumor
-0.3
665
Tumor
-0.3
866
Normal
-0.3
642
Normal
-0.3
353
Tumor
-0.3
148
Normal
-0.3
724
Normal
-0.3
573
Tumor
-0.3
647
Tumor
-0.3
564
Normal
-0.3
352
Normal
-0.3
192
Normal
-0.3
195
Tumor
-0.3
922
Normal
-0.3
314
Normal
-0.3
311
Tumor
-0.4
617
Tumor
-0.4
514
Normal
-0.4
572
Normal
-0.4
354
Normal
-0.4
722
Normal
-0.4
497
Tumor
-0.4
481
Tumor
-0.4
918
Normal
-0.4
534
Normal
-0.4
954
Normal
-0.4
364
Normal
-0.4
858
Normal
-0.4
447
Tumor
-0.4
912
Normal
-0.4
865
Tumor
-0.4
743
Tumor
-0.4
852
Normal
-0.4
777
Tumor
-0.4
756
Normal
-0.4
1014
Normal
-0.4
882
Normal
-0.4
328
Normal
-0.4
415
Tumor
-0.4
498
Normal
-0.4
224
Normal
-0.5
916
Normal
-0.5
913
Tumor
-0.5
478
Normal
-0.5
187
Tumor
-0.5
413
Tumor
-0.5
427
Tumor
-0.5
425
Tumor
-0.5
558
Normal
-0.5
814
Normal
-0.5
1032
Normal
-0.5
984
Normal
-0.5
221
Tumor
-0.5
145
Tumor
-0.5
636
Normal
-0.5
976
Normal
-0.5
1044
Normal
-0.5
414
Normal
-0.5
786
Normal
-0.5
1042
Normal
-0.6
964
Normal
-0.6
384
Normal
-0.6
563
Tumor
-0.6
926
Normal
-0.6
824
Normal
-0.6
917
Tumor
-0.6
444
Normal
-0.6
943
Tumor
-0.6
1046
Normal
-0.6
641
Tumor
-0.6
616
Normal
-0.6
528
Normal
-0.6
958
Normal
-0.7
428
Normal
-0.7
191
Tumor
-0.7
884
Normal
-0.7
424
Normal
-0.7
818
Normal
-0.8
628
Normal
-0.8
978
Normal
-0.8
863
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
