MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.1 nTPM
HPA Brain:34.0 nTPM
GTEx:13.1 nTPM
FANTOM5:46.4 Scaled Tags Per Million
Pig:38.9 nTPM
Mouse:57.5 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
2019 Male, age 18, unknown 40.4
2411 Female, age 72, unknown 37.1
2586 Male, age 75, left hemisphere 35.3
1827 Male, age 72, unknown 32.5
1833 Male, age 53, unknown 31.2
1870 Female, age 42, unknown 31.1
2828 Female, age 72, unknown 31.0
1830 Male, age 51, unknown 30.2
2666 Male, age 74, left hemisphere 28.4
2219 Male, age 76, both hemispheres 28.2
Dorsal raphe nucleus
nTPM: 34.0
2298 Female, age 72, unknown 37.1
1828 Male, age 53, unknown 34.4
2047 Male, age 72, unknown 34.3
2750 Male, age 76, both hemispheres 32.4
2016 Female, age 72, unknown 31.7
Inferior colliculus
nTPM: 32.0
2097 Female, age 72, unknown 37.3
1848 Female, age 42, unknown 32.1
1890 Male, age 53, unknown 31.0
2849 Male, age 72, unknown 27.6
Median raphe nucleus
nTPM: 29.4
2220 Male, age 76, midline 29.4
Periaquaductal grey, anterior
nTPM: 31.6
2502 Female, age 75, unknown 34.8
1795 Male, age 51, unknown 30.1
1947 Male, age 18, unknown 30.0
Periaquaductal grey, dorsal
nTPM: 28.3
2464 Female, age 72, unknown 31.2
1840 Male, age 53, unknown 30.5
1831 Male, age 72, unknown 26.9
2850 Male, age 76, both hemispheres 24.6
Periaquaductal grey, lateral
nTPM: 29.9
2272 Male, age 74, both hemispheres 33.6
2053 Male, age 18, unknown 29.4
2140 Male, age 76, both hemispheres 26.7
Pretectal area
nTPM: 34.0
2007 Male, age 72, unknown 38.8
1817 Female, age 42, unknown 37.8
1816 Male, age 51, unknown 37.4
2273 Male, age 74, both hemispheres 36.5
1944 Female, age 72, unknown 35.4
1815 Male, age 53, unknown 33.0
2224 Female, age 72, unknown 32.1
2667 Female, age 75, unknown 32.1
2316 Male, age 76, right hemisphere 31.6
2407 Male, age 75, both hemispheres 30.9
2825 Male, age 18, unknown 27.7
Red nucleus
nTPM: 33.2
2785 Male, age 18, unknown 37.9
2769 Male, age 72, unknown 35.0
1821 Female, age 72, unknown 34.9
2503 Female, age 72, unknown 34.1
2227 Male, age 72, unknown 33.7
1954 Female, age 42, unknown 33.5
1865 Male, age 51, unknown 33.2
1904 Male, age 53, unknown 32.6
2725 Female, age 75, unknown 32.5
2588 Male, age 74, left hemisphere 30.3
2823 Male, age 76, right hemisphere 30.2
2584 Male, age 75, left hemisphere 29.9
Substantia nigra
nTPM: 32.5
1916 Female, age 42, unknown 35.5
1941 Male, age 53, unknown 35.4
1851 Male, age 51, unknown 35.0
1889 Female, age 72, unknown 34.2
2241 Male, age 72, unknown 33.2
2590 Female, age 75, unknown 31.6
2665 Male, age 74, both hemispheres 31.5
2583 Male, age 75, right hemisphere 31.1
2409 Female, age 72, unknown 31.0
2699 Male, age 18, unknown 26.6
Superior colliculus
nTPM: 32.1
2087 Female, age 72, unknown 36.1
2261 Male, age 18, unknown 35.3
2664 Male, age 75, both hemispheres 33.4
2587 Male, age 74, left hemisphere 32.2
2668 Female, age 75, unknown 31.9
1839 Male, age 51, unknown 31.1
1913 Female, age 42, unknown 30.8
1796 Male, age 53, unknown 30.2
1995 Male, age 72, unknown 30.1
1895 Male, age 76, right hemisphere 30.0
Ventral tegmental area
nTPM: 32.0
2410 Female, age 72, unknown 36.6
1915 Female, age 42, unknown 32.0
2223 Female, age 72, unknown 31.5
2021 Male, age 53, unknown 31.3
1942 Male, age 51, unknown 30.8
2218 Male, age 76, both hemispheres 30.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.1
Samples: 139

Max nTPM: 23.7
Min nTPM: 6.7
Std nTPM: 3.2
Median nTPM: 13.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 21.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 20.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 19.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 19.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 18.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 18.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 18.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 18.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 18.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.4
FF:10158-103A5 76 years, female 46.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.5
Samples: 4

Max nTPM: 42.7
Min nTPM: 34.0
Sample A Female 42.2
Sample B Female 35.2
Sample C Male 42.7
Sample D Male 34.0
Midbrain
nTPM: 38.9
Samples: 4

Max nTPM: 44.9
Min nTPM: 33.9
Sample A Female 38.6
Sample B Female 38.2
Sample C Male 44.9
Sample D Male 33.9
Periaqueductal gray
nTPM: 35.0
Samples: 3

Max nTPM: 38.8
Min nTPM: 31.4
Sample B Female 34.9
Sample C Male 38.8
Sample D Male 31.4
Superior colliculi
nTPM: 36.4
Samples: 4

Max nTPM: 41.9
Min nTPM: 33.5
Sample A Female 34.2
Sample B Female 33.5
Sample C Male 41.9
Sample D Male 35.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 57.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.5
Samples: 4

Max nTPM: 62.1
Min nTPM: 51.5
Sample A Male 54.8
Sample B Male 62.1
Sample C Female 51.5
Sample D Female 61.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
2051 Antisense, RP_040507_01_E09, Mouse strain C57BL/6J (56 days, male) 0.9
2052 Antisense, RP_040507_01_E09, Mouse strain C57BL/6J (56 days, male) 0.6

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