We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARL8A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
91.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
77.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
75.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
72.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
71.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
69.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
66.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
66.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
65.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
65.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
65.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
64.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
64.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
63.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
63.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
62.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
61.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
61.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
61.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
59.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
58.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
57.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
57.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
57.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
56.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
56.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
54.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
54.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
54.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
53.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
53.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
53.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
52.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
52.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
52.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
52.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
52.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
52.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
51.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
51.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
51.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
51.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
51.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
51.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
49.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
49.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
48.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
47.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
46.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
46.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
45.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
45.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
45.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
45.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
45.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
45.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
44.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
44.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
44.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
44.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
44.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
43.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
43.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
43.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
42.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
42.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
41.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
41.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
40.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
40.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
40.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
40.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
40.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
39.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
39.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
38.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
38.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
38.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
38.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
37.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
37.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
37.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
37.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
36.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
36.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
36.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
36.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
35.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
35.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
35.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
34.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
34.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
33.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
33.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
32.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
32.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
31.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
31.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
29.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
29.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
28.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
27.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
27.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
23.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARL8A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.0
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
53.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
46.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
43.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
43.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
37.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
36.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
35.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
34.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
34.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
33.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
26.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.0
1025
Tumor
0.7
491
Tumor
0.7
271
Tumor
0.6
421
Tumor
0.6
221
Tumor
0.6
125
Tumor
0.5
533
Tumor
0.5
231
Tumor
0.5
257
Tumor
0.5
171
Tumor
0.5
455
Tumor
0.4
111
Normal
0.4
881
Tumor
0.4
135
Tumor
0.4
136
Normal
0.4
721
Tumor
0.4
343
Tumor
0.3
573
Tumor
0.3
777
Tumor
0.3
745
Tumor
0.3
222
Normal
0.3
433
Tumor
0.3
124
Normal
0.3
515
Tumor
0.3
432
Normal
0.3
451
Tumor
0.3
361
Tumor
0.3
557
Tumor
0.3
1031
Tumor
0.3
824
Normal
0.3
127
Tumor
0.3
126
Normal
0.3
616
Normal
0.3
563
Tumor
0.3
354
Normal
0.3
297
Tumor
0.3
128
Normal
0.3
436
Normal
0.2
191
Tumor
0.2
617
Tumor
0.2
882
Normal
0.2
384
Normal
0.2
671
Tumor
0.2
1042
Normal
0.2
148
Normal
0.2
713
Tumor
0.2
912
Normal
0.2
185
Tumor
0.2
428
Normal
0.2
724
Normal
0.2
1045
Tumor
0.2
114
Normal
0.2
123
Tumor
0.2
977
Tumor
0.2
444
Normal
0.2
884
Normal
0.2
328
Normal
0.2
952
Normal
0.2
443
Tumor
0.2
192
Normal
0.2
466
Normal
0.2
1032
Normal
0.2
471
Tumor
0.2
462
Normal
0.2
672
Normal
0.2
666
Normal
0.2
858
Normal
0.2
686
Normal
0.2
262
Normal
0.2
786
Normal
0.2
472
Normal
0.2
434
Normal
0.2
132
Normal
0.2
483
Tumor
0.2
146
Normal
0.2
445
Tumor
0.2
527
Tumor
0.2
851
Tumor
0.1
362
Normal
0.1
258
Normal
0.1
697
Tumor
0.1
564
Normal
0.1
352
Normal
0.1
213
Tumor
0.1
272
Normal
0.1
456
Normal
0.1
481
Tumor
0.1
867
Tumor
0.1
414
Normal
0.1
162
Normal
0.1
1041
Tumor
0.1
187
Tumor
0.1
954
Normal
0.1
344
Normal
0.1
217
Tumor
0.1
823
Tumor
0.1
188
Normal
0.1
1022
Normal
0.1
746
Normal
0.1
353
Tumor
0.1
615
Tumor
0.1
356
Normal
0.1
218
Normal
0.1
618
Normal
0.1
1046
Normal
0.1
396
Normal
0.1
1028
Normal
0.1
364
Normal
0.1
664
Normal
0.1
641
Tumor
0.1
131
Tumor
0.1
627
Tumor
0.1
195
Tumor
0.1
478
Normal
0.1
172
Normal
0.1
975
Tumor
0.1
1021
Tumor
0.1
196
Normal
0.1
685
Tumor
0.1
648
Normal
0.1
482
Normal
0.1
415
Tumor
0.1
298
Normal
0.1
464
Normal
0.1
446
Normal
0.1
142
Normal
0.1
968
Normal
0.1
528
Normal
0.1
412
Normal
0.1
862
Normal
0.1
878
Normal
0.1
756
Normal
0.0
955
Tumor
0.0
526
Normal
0.0
314
Normal
0.0
866
Normal
0.0
715
Tumor
0.0
523
Tumor
0.0
525
Tumor
0.0
723
Tumor
0.0
214
Normal
0.0
426
Normal
0.0
424
Normal
0.0
926
Normal
0.0
883
Tumor
0.0
113
Tumor
0.0
1043
Tumor
0.0
461
Tumor
0.0
261
Tumor
0.0
422
Normal
0.0
376
Normal
0.0
375
Tumor
0.0
816
Normal
0.0
536
Normal
0.0
917
Tumor
0.0
447
Tumor
0.0
537
Tumor
0.0
311
Tumor
0.0
662
Normal
0.0
514
Normal
0.0
416
Normal
0.0
145
Tumor
0.0
716
Normal
0.0
914
Normal
0.0
722
Normal
0.0
714
Normal
0.0
365
Tumor
0.0
916
Normal
0.0
474
Normal
0.0
728
Normal
0.0
534
Normal
0.0
112
Tumor
0.0
868
Normal
0.0
978
Normal
0.0
395
Tumor
0.0
568
Normal
0.0
488
Normal
0.0
938
Normal
0.0
911
Tumor
0.0
738
Normal
0.0
877
Tumor
0.0
918
Normal
0.0
538
Normal
0.0
278
Normal
-0.1
553
Tumor
-0.1
268
Normal
-0.1
546
Normal
-0.1
366
Normal
-0.1
518
Normal
-0.1
467
Tumor
-0.1
742
Normal
-0.1
394
Normal
-0.1
1026
Normal
-0.1
368
Normal
-0.1
283
Tumor
-0.1
492
Normal
-0.1
737
Tumor
-0.1
558
Normal
-0.1
312
Normal
-0.1
435
Tumor
-0.1
313
Tumor
-0.1
186
Normal
-0.1
813
Tumor
-0.1
572
Normal
-0.1
864
Normal
-0.1
138
Normal
-0.1
953
Tumor
-0.1
956
Normal
-0.1
228
Normal
-0.1
642
Normal
-0.1
423
Tumor
-0.1
628
Normal
-0.1
743
Tumor
-0.1
212
Normal
-0.1
924
Normal
-0.1
1016
Normal
-0.1
517
Tumor
-0.1
468
Normal
-0.1
636
Normal
-0.1
647
Tumor
-0.1
342
Normal
-0.1
392
Normal
-0.1
818
Normal
-0.1
874
Normal
-0.1
224
Normal
-0.1
817
Tumor
-0.1
358
Normal
-0.1
498
Normal
-0.1
984
Normal
-0.1
448
Normal
-0.1
284
Normal
-0.1
567
Tumor
-0.1
388
Normal
-0.1
141
Tumor
-0.1
386
Normal
-0.1
913
Tumor
-0.1
516
Normal
-0.1
425
Tumor
-0.1
385
Tumor
-0.1
1014
Normal
-0.1
852
Normal
-0.1
696
Normal
-0.1
332
Normal
-0.1
524
Normal
-0.1
1044
Normal
-0.1
232
Normal
-0.1
331
Tumor
-0.2
661
Tumor
-0.2
976
Normal
-0.2
286
Normal
-0.2
161
Tumor
-0.2
922
Normal
-0.2
741
Tumor
-0.2
744
Normal
-0.2
814
Normal
-0.2
393
Tumor
-0.2
778
Normal
-0.2
463
Tumor
-0.2
357
Tumor
-0.2
574
Normal
-0.2
327
Tumor
-0.2
363
Tumor
-0.2
966
Normal
-0.2
923
Tumor
-0.2
267
Tumor
-0.2
494
Normal
-0.2
341
Tumor
-0.2
477
Tumor
-0.2
921
Tumor
-0.2
431
Tumor
-0.2
958
Normal
-0.2
513
Tumor
-0.2
223
Tumor
-0.2
411
Tumor
-0.2
484
Normal
-0.2
925
Tumor
-0.2
554
Normal
-0.2
951
Tumor
-0.2
963
Tumor
-0.2
227
Tumor
-0.2
367
Tumor
-0.2
957
Tumor
-0.2
137
Tumor
-0.2
571
Tumor
-0.2
383
Tumor
-0.2
964
Normal
-0.2
943
Tumor
-0.2
1027
Tumor
-0.2
698
Normal
-0.2
277
Tumor
-0.2
413
Tumor
-0.2
665
Tumor
-0.3
863
Tumor
-0.3
815
Tumor
-0.3
944
Normal
-0.3
873
Tumor
-0.3
857
Tumor
-0.3
452
Normal
-0.3
535
Tumor
-0.3
427
Tumor
-0.4
663
Tumor
-0.4
1015
Tumor
-0.4
391
Tumor
-0.4
285
Tumor
-0.4
493
Tumor
-0.4
635
Tumor
-0.4
982
Normal
-0.4
915
Tumor
-0.4
351
Tumor
-0.4
785
Tumor
-0.4
695
Tumor
-0.4
211
Tumor
-0.4
861
Tumor
-0.4
387
Tumor
-0.4
545
Tumor
-0.5
727
Tumor
-0.5
355
Tumor
-0.5
487
Tumor
-0.6
937
Tumor
-0.6
1013
Tumor
-0.6
465
Tumor
-0.6
755
Tumor
-0.6
497
Tumor
-0.6
983
Tumor
-0.6
473
Tumor
-0.7
865
Tumor
-0.7
965
Tumor
-0.7
981
Tumor
-0.7
967
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
